Glyma.07g102500

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Report for Sequence Feature Glyma.07g102500

Feature Type:	gene_model
Chromosome:	Gm07
Start:	9785238
stop:	9789350
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07g102500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73590.1	AT	Auxin efflux carrier family protein	JGI	N/A	IEA
AT2G01420.2	AT	Auxin efflux carrier family protein	JGI	N/A	IEA
GO:0009734	GO-bp	auxin-activated signaling pathway	EnsemblGenomes	N/A	IEA
GO:0009926	GO-bp	auxin polar transport	EnsemblGenomes	N/A	IEA
GO:0010252	GO-bp	auxin homeostasis	EnsemblGenomes	N/A	IEA
GO:0010315	GO-bp	auxin efflux	EnsemblGenomes	N/A	IEA
GO:0055085	GO-bp	transmembrane transport	EnsemblGenomes	N/A	IEA
GO:0055085	GO-bp	transmembrane transport	JGI	N/A	IEA
GO:0005783	GO-cc	endoplasmic reticulum	EnsemblGenomes	N/A	IEA
GO:0005886	GO-cc	plasma membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
GO:0010329	GO-mf	auxin efflux transmembrane transporter activity	EnsemblGenomes	N/A	IEA
PF03547	PFAM	Membrane transport protein	JGI	N/A	IEA

Proteins Associated with Glyma.07g102500

Locus	Gene Symbol	Protein Name
	PIN1B	auxin efflux carrier component 1b
	PIN1b	PIN-formed 1 gene b

Expression Patterns of Glyma.07g102500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07g102500

Paralog	Evidence	Comments
Glyma.09g176300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g102500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma07g11550	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07g102500

Limit To All Plant Sequences

>Glyma.07g102500.2 sequence-type=transcript locus=Glyma.07g102500 ID=Glyma.07g102500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACCACCTCCCATCCCTTcccaaaccccaaaccccaaatccaaaccaaacacacttcaaaacaaaaagcaaaacaacaaagtggcaatacaaaaaaaaaaaaaaactaaataaaaAGGCAACAAACCCCCCCACTCTGCCTTGTGCTTTGGAGACTGCGAGTGCAACCTTTCTTGCAGCTCGCAAAGCTGAAAAAATATTTGCTGTATTCTGCAGCATATTACCACCACCCACTCACTCACTTCCCCAAAAACACATGCTCTTCCACATCCCTATATATCTTTTCAatcttcatcatcatcatcaccaccaACTCCAACTCTCCAAAACTTGCCACTTCAACCTTCCTATATATTCCTTCCTCCACTCTCTTTCTTTACTTCTTCTGCTATCTTTCTGAGAGACCTCACAAACCCACAAATATGATCACCTTAACAGACTTCTACCATGTCATGACTGCAATGGTGCCACTCTATGTGGCCATGATACTAGCCTATGGCTCAGTGAAGTGGTGGAAGATTTTCTCCCCTGACCAATGCTCTGGCATCAACCGTTTTGTGGCACTCTTTGCAGTGCCTCTTCTCTCCTTCCACTTCATAGCCTCCAACAACCCTTACGAAATGAACCTCAGGTTCCTAGCTGCTGACACCCTTCAAAAGATCATAATACTAGTCCTCCTTGCAGTTTGGAGCAACATCGCCAAAAGGGGTTGCTTGGAATGGGCCATAACCTTGTTCTCTCTCTCCACCCTCCCTAACACTTTGGTCATGGGCATCCCTTTGCTCAAAGGGATGTATGGTGACTTCTCAGGGTCCCTTATGGTGCAAATTGTGGTCCTCCAGTGTATCATTTGGTACACCTTGATGCTGTTCTTGTTTGAGTTTAGAGGTGCCAGAATGCTTATCTCTGAGCAGTTCCCTGACACTGCTGGCTCCATTGTCTCCATCCATGTTGACTCTGATGTCATGTCATTGGATGGAAGGCAACCACTTGAGACTGAAGCTGAGATCAAGGAAGATGGTAAACTCCATGTCACTGTGAGGAAGTCCAATGCCTCAAGATCAGACATCTTCTCAAGAAGGTCTCAGGGTCTCTCTTCCACCACTCCACGCCCTTCTAACCTCACTAATGCTGAGATATATTCTTTGCAATCCTCTAGGAACCCTACACCGAGAGGTTCCAGCTTCAACCACACTGATTTCTACTCTATGATGGCTGCTGGTGGCAGGAACTCCAACTTTGGTGCCTCTGATGTTTATGGCCTTTCAGCCTCAAGAGGGCCAACTCCAAGGCCTTCTAACTATGATGAAGATGGTGGGAAGCCAAAGTTCCATTACCATGCTGGTGGAACTGGACACTACCCTGCACCAAACCCTGGCATGTTCTCTCCCTCAAATGGGTCCAAAAGTGTTGCTGCTGCTAATGCTAATGCTAATGCCAAAAGGCCTAATGGGCAGGCTCAGCTGAAGCCTGAGGATGGGAATAGGGACCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCACCAGTCTCTGACGTGTTTGGTGCCCATGAGTATGGAGGTCATGATCAGAAAGAAGTCAAATTGAATGTATCTCCAGGGAAAGTGGAGAATCATAGGGACACTCAAGAAGACTACCTAGAGAAAGATGAGTTCAGCTTTGGGAATAGAGGAATGGATAGGGAGATGAATCAGCTTGAAGGTCTCTTCATGGCTTTGCAACCGAGGGTCATAGCATGTGGAAATTCCACCGCAGCTTTTGCCATGGCTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCGTTGCTGTTGGACTCAAAGGTGTTCTCCTACATGTTGCCATTGTTCAGGCAGCTCTTCCCCAAGGAATTGTCCCATTTGTCTTTGCTAAGGAATATAATGTACATCCTGATATTCTCAGCACAGCTGTTATTTTTGGGATGTTGATTGCTTTGCCCATAACTCTAGTGTACTACATCTTGTTGGGGTTGTGAATGAAAGAAATGATGGATGATACAGAAGATTCACGTGTGGCATCCATGCAAAGCTCGGTTGAGGCTTGTTGAGCATCAGACAAAAAAAAGGGGGTCATAAAGCAACAATAGAAAAGAAGCATCACGAGAATTTGGATAGGAAGAACCCCAGGATCAGttttttttttttaaatttatttatttgttttctttttcttttttGAATGAATTGCCCTTTGTTAGTGAAAATTAGTGTAAAATCATGATGTAGCTAATTTACAAAATGATTATCTCGTTAAATTTTTATATTATAATGTCCTCGGATTCCATGTCACTCATCAATTGAAGGATAAGAAAGCATGGGAAACTTTGTTGATGAAAATGGTAGCGGTATGATC

Coding sequences of Glyma.07g102500

Limit To All Plant Sequences

>Glyma.07g102500.1 sequence-type=CDS polypeptide=Glyma.07g102500.1.p locus=Glyma.07g102500 ID=Glyma.07g102500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCACCTTAACAGACTTCTACCATGTCATGACTGCAATGGTGCCACTCTATGTGGCCATGATACTAGCCTATGGCTCAGTGAAGTGGTGGAAGATTTTCTCCCCTGACCAATGCTCTGGCATCAACCGTTTTGTGGCACTCTTTGCAGTGCCTCTTCTCTCCTTCCACTTCATAGCCTCCAACAACCCTTACGAAATGAACCTCAGGTTCCTAGCTGCTGACACCCTTCAAAAGATCATAATACTAGTCCTCCTTGCAGTTTGGAGCAACATCGCCAAAAGGGGTTGCTTGGAATGGGCCATAACCTTGTTCTCTCTCTCCACCCTCCCTAACACTTTGGTCATGGGCATCCCTTTGCTCAAAGGGATGTATGGTGACTTCTCAGGGTCCCTTATGGTGCAAATTGTGGTCCTCCAGTGTATCATTTGGTACACCTTGATGCTGTTCTTGTTTGAGTTTAGAGGTGCCAGAATGCTTATCTCTGAGCAGTTCCCTGACACTGCTGGCTCCATTGTCTCCATCCATGTTGACTCTGATGTCATGTCATTGGATGGAAGGCAACCACTTGAGACTGAAGCTGAGATCAAGGAAGATGGTAAACTCCATGTCACTGTGAGGAAGTCCAATGCCTCAAGATCAGACATCTTCTCAAGAAGGTCTCAGGGTCTCTCTTCCACCACTCCACGCCCTTCTAACCTCACTAATGCTGAGATATATTCTTTGCAATCCTCTAGGAACCCTACACCGAGAGGTTCCAGCTTCAACCACACTGATTTCTACTCTATGATGGCTGCTGGTGGCAGGAACTCCAACTTTGGTGCCTCTGATGTTTATGGCCTTTCAGCCTCAAGAGGGCCAACTCCAAGGCCTTCTAACTATGATGAAGATGGTGGGAAGCCAAAGTTCCATTACCATGCTGGTGGAACTGGACACTACCCTGCACCAAACCCTGGCATGTTCTCTCCCTCAAATGGGTCCAAAAGTGTTGCTGCTGCTAATGCTAATGCTAATGCCAAAAGGCCTAATGGGCAGGCTCAGCTGAAGCCTGAGGATGGGAATAGGGACCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCACCAGTCTCTGACGTGTTTGGTGCCCATGAGTATGGAGGTCATGATCAGAAAGAAGTCAAATTGAATGTATCTCCAGGGAAAGTGGAGAATCATAGGGACACTCAAGAAGACTACCTAGAGAAAGATGAGTTCAGCTTTGGGAATAGAGGAATGGATAGGGAGATGAATCAGCTTGAAGGTGAGAAGGTTGGAGATGGGAAGCCAAAAACCATGCCTCCAGCAAGTGTGATGACAAGGCTTATATTGATTATGGTGTGGAGAAAACTCATCAGAAACCCCAACACCTACTCTAGCCTAATTGGCCTCACTTGGTCTCTTGTTTCATTCAAGTGGAATGTGGAGATGCCTGCCATAATAGCAAAGTCTATCTCCATATTGTCAGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGTCTCTTCATGGCTTTGCAACCGAGGGTCATAGCATGTGGAAATTCCACCGCAGCTTTTGCCATGGCTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCGTTGCTGTTGGACTCAAAGGTGTTCTCCTACATGTTGCCATTGTTCAGGCAGCTCTTCCCCAAGGAATTGTCCCATTTGTCTTTGCTAAGGAATATAATGTACATCCTGATATTCTCAGCACAGCTGTTATTTTTGGGATGTTGATTGCTTTGCCCATAACTCTAGTGTACTACATCTTGTTGGGGTTGTGA

>Glyma.07g102500.2 sequence-type=CDS polypeptide=Glyma.07g102500.2.p locus=Glyma.07g102500 ID=Glyma.07g102500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCACCTTAACAGACTTCTACCATGTCATGACTGCAATGGTGCCACTCTATGTGGCCATGATACTAGCCTATGGCTCAGTGAAGTGGTGGAAGATTTTCTCCCCTGACCAATGCTCTGGCATCAACCGTTTTGTGGCACTCTTTGCAGTGCCTCTTCTCTCCTTCCACTTCATAGCCTCCAACAACCCTTACGAAATGAACCTCAGGTTCCTAGCTGCTGACACCCTTCAAAAGATCATAATACTAGTCCTCCTTGCAGTTTGGAGCAACATCGCCAAAAGGGGTTGCTTGGAATGGGCCATAACCTTGTTCTCTCTCTCCACCCTCCCTAACACTTTGGTCATGGGCATCCCTTTGCTCAAAGGGATGTATGGTGACTTCTCAGGGTCCCTTATGGTGCAAATTGTGGTCCTCCAGTGTATCATTTGGTACACCTTGATGCTGTTCTTGTTTGAGTTTAGAGGTGCCAGAATGCTTATCTCTGAGCAGTTCCCTGACACTGCTGGCTCCATTGTCTCCATCCATGTTGACTCTGATGTCATGTCATTGGATGGAAGGCAACCACTTGAGACTGAAGCTGAGATCAAGGAAGATGGTAAACTCCATGTCACTGTGAGGAAGTCCAATGCCTCAAGATCAGACATCTTCTCAAGAAGGTCTCAGGGTCTCTCTTCCACCACTCCACGCCCTTCTAACCTCACTAATGCTGAGATATATTCTTTGCAATCCTCTAGGAACCCTACACCGAGAGGTTCCAGCTTCAACCACACTGATTTCTACTCTATGATGGCTGCTGGTGGCAGGAACTCCAACTTTGGTGCCTCTGATGTTTATGGCCTTTCAGCCTCAAGAGGGCCAACTCCAAGGCCTTCTAACTATGATGAAGATGGTGGGAAGCCAAAGTTCCATTACCATGCTGGTGGAACTGGACACTACCCTGCACCAAACCCTGGCATGTTCTCTCCCTCAAATGGGTCCAAAAGTGTTGCTGCTGCTAATGCTAATGCTAATGCCAAAAGGCCTAATGGGCAGGCTCAGCTGAAGCCTGAGGATGGGAATAGGGACCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCACCAGTCTCTGACGTGTTTGGTGCCCATGAGTATGGAGGTCATGATCAGAAAGAAGTCAAATTGAATGTATCTCCAGGGAAAGTGGAGAATCATAGGGACACTCAAGAAGACTACCTAGAGAAAGATGAGTTCAGCTTTGGGAATAGAGGAATGGATAGGGAGATGAATCAGCTTGAAGGTCTCTTCATGGCTTTGCAACCGAGGGTCATAGCATGTGGAAATTCCACCGCAGCTTTTGCCATGGCTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCGTTGCTGTTGGACTCAAAGGTGTTCTCCTACATGTTGCCATTGTTCAGGCAGCTCTTCCCCAAGGAATTGTCCCATTTGTCTTTGCTAAGGAATATAATGTACATCCTGATATTCTCAGCACAGCTGTTATTTTTGGGATGTTGATTGCTTTGCCCATAACTCTAGTGTACTACATCTTGTTGGGGTTGTGA

Predicted protein sequences of Glyma.07g102500

Limit To All Plant Sequences

>Glyma.07g102500.1.p sequence-type=predicted peptide transcript=Glyma.07g102500.1 locus=Glyma.07g102500 ID=Glyma.07g102500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNLRFLAADTLQKIIILVLLAVWSNIAKRGCLEWAITLFSLSTLPNTLVMGIPLLKGMYGDFSGSLMVQIVVLQCIIWYTLMLFLFEFRGARMLISEQFPDTAGSIVSIHVDSDVMSLDGRQPLETEAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGGRNSNFGASDVYGLSASRGPTPRPSNYDEDGGKPKFHYHAGGTGHYPAPNPGMFSPSNGSKSVAAANANANAKRPNGQAQLKPEDGNRDLHMFVWSSSASPVSDVFGAHEYGGHDQKEVKLNVSPGKVENHRDTQEDYLEKDEFSFGNRGMDREMNQLEGEKVGDGKPKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFKWNVEMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRVIACGNSTAAFAMAVRFLTGPAVMAAASVAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYILLGL*

>Glyma.07g102500.2.p sequence-type=predicted peptide transcript=Glyma.07g102500.2 locus=Glyma.07g102500 ID=Glyma.07g102500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNLRFLAADTLQKIIILVLLAVWSNIAKRGCLEWAITLFSLSTLPNTLVMGIPLLKGMYGDFSGSLMVQIVVLQCIIWYTLMLFLFEFRGARMLISEQFPDTAGSIVSIHVDSDVMSLDGRQPLETEAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGGRNSNFGASDVYGLSASRGPTPRPSNYDEDGGKPKFHYHAGGTGHYPAPNPGMFSPSNGSKSVAAANANANAKRPNGQAQLKPEDGNRDLHMFVWSSSASPVSDVFGAHEYGGHDQKEVKLNVSPGKVENHRDTQEDYLEKDEFSFGNRGMDREMNQLEGLFMALQPRVIACGNSTAAFAMAVRFLTGPAVMAAASVAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYILLGL*

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