Glyma.07g090900

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Report for Sequence Feature Glyma.07g090900

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8509223
stop:	8515754
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07g090900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07300.1	AT	NagB/RpiA/CoA transferase-like superfamily protein	JGI	N/A	IEA
GO:0044237	GO-bp	cellular metabolic process	EnsemblGenomes	N/A	IEA
GO:0044237	GO-bp	cellular metabolic process	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
KOG1465	KOG	Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7)	JGI	N/A	IEA
PTHR10233	Panther	TRANSLATION INITIATION FACTOR EIF-2B	JGI	N/A	IEA
PTHR10233:SF9	Panther	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA	JGI	N/A	IEA
PF01008	PFAM	Initiation factor 2 subunit family	JGI	N/A	IEA

Expression Patterns of Glyma.07g090900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g090900 not represented in the dataset	Glyma.07g090900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07g090900

Paralog	Evidence	Comments
Glyma.09g185000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g090900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma07g10090	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07g090900

Limit To All Plant Sequences

>Glyma.07g090900.2 sequence-type=transcript locus=Glyma.07g090900 ID=Glyma.07g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTACTTTAGCTTACCCTTTTGTTTGTACTTTCATACATTAAAATCCTATTCTGTTTTTCTTATTTTTTATTTTATTTATTATTGTTCTTATTTTCAGGTTGAGTTTGGCCAAAATGCCGGATGTTCATACCCTCGTTAATGATTTTCTGAATCAGCTTAAAAAACGTAAAATTGAAGGTTCTCAGGCCACAGCAAAGCTCACAGCAGAGTTGCTCCGGTCTGTGATTTCACAGCAGCGAGTGCCACACACGAACCAAGCCACAACTCTGATTAATGCAGTGAGGGCTGTGGGGGAGCAGCTTATTGCTGCTAATCCTATTGAGCTAGCTGTTGGAAATATTGTGAGGCGTGTTTTGCACATTATAAGGGAAGAGGATCTTTCCCTTGCAACAGCTGCTATGGATGGTTTGGGGGTATCAGCTGCAAGTGACGATGAAGATGATGCGGAGCGAGATGAAAATCCTGTTTTATctgcggctgctgttgcagctgctgcCAGAAGCACATTGCGTCCACCGTCATTGCAAACTCTTCTAGAGGATACATCTGATTCAGCTGCTGCTCCCCCCACATCTTCCTCAGGGGGTGAATCTGACGGGAGAAGTAGATCTGTGGAAAAAGGTTCAAGAGGGAGGAAATTGAAGCATGATGTCATCGAAGCAGTCAATGAACTTATTCAAGACATATCTACTTGCTATGAACAAATAGCTGAGCAGGCAGTGGAGCACATTCATCACAATGAGGTAATATTAACATTAGGCAGCTCAAAAACAGTGTTGGAATTTCTTTATGCTGCGAAGGAAAAACAGAGATCATTTAAGGTCTTTGTTGCTGAAGGGGCCCCTAGATATCAGGGACATCTCCTTGCAAAAGAATTGGCTGCTAGAGGCTTACAGACCACAGTAATTACTGATTCAGCTGTTTTTGCAATGATTTCTCGAGTGAACATGGTTATAGTTGGAGCTCATGCTGTCATGGCTAATGGTGGAGTTATTGCACCAGTGGGGTTAAATATGGCTGCACTTGCAGCTCAAAGGCATGCTGTTCCATTTGTTGTACTTGCTGGGAGTCACAAGTTGTGCCCTTTGTATCCACACAATCCTGAAGTCCTACTGAATGAGCTGAGATCCCCATCTGAGCTACTTGACTTTGGGGAATTCTCAGATTGCATGGATTCTGCAAGCGGTGCCGGTTCTCTTCATGTTGTTAATCCAACATTTGATTACGTGCCACCAAAACTTGTTAGTCTCTTTATTACTGACACAGGAGGGCATAATCCTTCCTATATGTACCGGCTCATAGCTGATTACTACTCAGCTGATGATTTGGTGGTGAAACGAAGACCCACTACAGGGAGTTGAGTTCAGATACCCCAAATTTTGTCCTATAACTGTTGTTGGTGGTCTCTGATGAACCATGAGCCGGAGATATTTGTGTAGTAGAAAATCTTATTCAATTGTAGTAATTGGGGTGGAGAAATTGTAACCGTGGAAATGATATGGGAAAATACAAAGTGAAACAAGGAAAATTATATTTTTGTGGTTGCTGACTTCTTGGACATAACCTTGTCGTTTTTGTTTTCGGTCCACTCGTGGGCATTCAAGAGTATCACTTGTCACCATTTTTTTTATTGTACATCTTTGTTTCCACATAAAGAAATGATAATACTATTTTCGTCTATAATATACAAACTTCTAGTCTAGCT

Coding sequences of Glyma.07g090900

Limit To All Plant Sequences

>Glyma.07g090900.1 sequence-type=CDS polypeptide=Glyma.07g090900.1.p locus=Glyma.07g090900 ID=Glyma.07g090900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGGATGTTCATACCCTCGTTAATGATTTTCTGAATCAGCTTAAAAAACGTAAAATTGAAGGTTCTCAGGCCACAGCAAAGCTCACAGCAGAGTTGCTCCGGTCTGTGATTTCACAGCAGCGAGTGCCACACACGAACCAAGCCACAACTCTGATTAATGCAGTGAGGGCTGTGGGGGAGCAGCTTATTGCTGCTAATCCTATTGAGCTAGCTGTTGGAAATATTGTGAGGCGTGTTTTGCACATTATAAGGGAAGAGGATCTTTCCCTTGCAACAGCTGCTATGGATGGTTTGGGGGTATCAGCTGCAAGTGACGATGAAGATGATGCGGAGCGAGATGAAAATCCTGTTTTATCTGCGGCTGCTGTTGCAGCTGCTGCCAGAAGCACATTGCGTCCACCGTCATTGCAAACTCTTCTAGAGGATACATCTGATTCAGCTGCTGCTCCCCCCACATCTTCCTCAGGGGGTGAATCTGACGGGAGAAGTAGATCTGTGGAAAAAGGTTCAAGAGGGAGGAAATTGAAGCATGATGTCATCGAAGCAGTCAATGAACTTATTCAAGACATATCTACTTGCTATGAACAAATAGCTGAGCAGGCAGTGGAGCACATTCATCACAATGAGGTAATATTAACATTAGGCAGCTCAAAAACAGTGTTGGAATTTCTTTATGCTGCGAAGGAAAAACAGAGATCATTTAAGGTCTTTGTTGCTGAAGGGGCCCCTAGATATCAGGGACATCTCCTTGCAAAAGAATTGGCTGCTAGAGGCTTACAGACCACAGTAATTACTGATTCAGCTGTTTTTGCAATGATTTCTCGAGTGAACATGGTTATAGTTGGAGCTCATGCTGTCATGGCTAATGGTGGAGTTATTGCACCAGTGGGGTTAAATATGGCTGCACTTGCAGCTCAAAGGCATGCTGTTCCATTTGTTGTACTTGCTGGGAGTCACAAGTTGTGCCCTTTGTATCCACACAATCCTGAAGTCCTACTGAATGAGCTGAGATCCCCATCTGAGCTACTTGACTTTGGGGAATTCTCAGATTGCATGGATTCTGCAAGCGGTGCCGGTTCTCTTCATGTTGTTAATCCAACATTTGATTACGTGCCACCAAAACTTGTTAGTCTCTTTATTACTGACACAGGAGGGCATAATCCTTCCTATATGTACCGGCTCATAGCTGATTACTACTCAGCTGATGATTTGGTGGTGAAACGAAGACCCACTACAGGGAGTTGA

>Glyma.07g090900.2 sequence-type=CDS polypeptide=Glyma.07g090900.2.p locus=Glyma.07g090900 ID=Glyma.07g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGGATGTTCATACCCTCGTTAATGATTTTCTGAATCAGCTTAAAAAACGTAAAATTGAAGGTTCTCAGGCCACAGCAAAGCTCACAGCAGAGTTGCTCCGGTCTGTGATTTCACAGCAGCGAGTGCCACACACGAACCAAGCCACAACTCTGATTAATGCAGTGAGGGCTGTGGGGGAGCAGCTTATTGCTGCTAATCCTATTGAGCTAGCTGTTGGAAATATTGTGAGGCGTGTTTTGCACATTATAAGGGAAGAGGATCTTTCCCTTGCAACAGCTGCTATGGATGGTTTGGGGGTATCAGCTGCAAGTGACGATGAAGATGATGCGGAGCGAGATGAAAATCCTGTTTTATCTGCGGCTGCTGTTGCAGCTGCTGCCAGAAGCACATTGCGTCCACCGTCATTGCAAACTCTTCTAGAGGATACATCTGATTCAGCTGCTGCTCCCCCCACATCTTCCTCAGGGGGTGAATCTGACGGGAGAAGTAGATCTGTGGAAAAAGGTTCAAGAGGGAGGAAATTGAAGCATGATGTCATCGAAGCAGTCAATGAACTTATTCAAGACATATCTACTTGCTATGAACAAATAGCTGAGCAGGCAGTGGAGCACATTCATCACAATGAGGTAATATTAACATTAGGCAGCTCAAAAACAGTGTTGGAATTTCTTTATGCTGCGAAGGAAAAACAGAGATCATTTAAGGTCTTTGTTGCTGAAGGGGCCCCTAGATATCAGGGACATCTCCTTGCAAAAGAATTGGCTGCTAGAGGCTTACAGACCACAGTAATTACTGATTCAGCTGTTTTTGCAATGATTTCTCGAGTGAACATGGTTATAGTTGGAGCTCATGCTGTCATGGCTAATGGTGGAGTTATTGCACCAGTGGGGTTAAATATGGCTGCACTTGCAGCTCAAAGGCATGCTGTTCCATTTGTTGTACTTGCTGGGAGTCACAAGTTGTGCCCTTTGTATCCACACAATCCTGAAGTCCTACTGAATGAGCTGAGATCCCCATCTGAGCTACTTGACTTTGGGGAATTCTCAGATTGCATGGATTCTGCAAGCGGTGCCGGTTCTCTTCATGTTGTTAATCCAACATTTGATTACGTGCCACCAAAACTTGTTAGTCTCTTTATTACTGACACAGGAGGGCATAATCCTTCCTATATGTACCGGCTCATAGCTGATTACTACTCAGCTGATGATTTGGTGGTGAAACGAAGACCCACTACAGGGAGTTGA

Predicted protein sequences of Glyma.07g090900

Limit To All Plant Sequences

>Glyma.07g090900.1.p sequence-type=predicted peptide transcript=Glyma.07g090900.1 locus=Glyma.07g090900 ID=Glyma.07g090900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPDVHTLVNDFLNQLKKRKIEGSQATAKLTAELLRSVISQQRVPHTNQATTLINAVRAVGEQLIAANPIELAVGNIVRRVLHIIREEDLSLATAAMDGLGVSAASDDEDDAERDENPVLSAAAVAAAARSTLRPPSLQTLLEDTSDSAAAPPTSSSGGESDGRSRSVEKGSRGRKLKHDVIEAVNELIQDISTCYEQIAEQAVEHIHHNEVILTLGSSKTVLEFLYAAKEKQRSFKVFVAEGAPRYQGHLLAKELAARGLQTTVITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMAALAAQRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDSASGAGSLHVVNPTFDYVPPKLVSLFITDTGGHNPSYMYRLIADYYSADDLVVKRRPTTGS*

>Glyma.07g090900.2.p sequence-type=predicted peptide transcript=Glyma.07g090900.2 locus=Glyma.07g090900 ID=Glyma.07g090900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPDVHTLVNDFLNQLKKRKIEGSQATAKLTAELLRSVISQQRVPHTNQATTLINAVRAVGEQLIAANPIELAVGNIVRRVLHIIREEDLSLATAAMDGLGVSAASDDEDDAERDENPVLSAAAVAAAARSTLRPPSLQTLLEDTSDSAAAPPTSSSGGESDGRSRSVEKGSRGRKLKHDVIEAVNELIQDISTCYEQIAEQAVEHIHHNEVILTLGSSKTVLEFLYAAKEKQRSFKVFVAEGAPRYQGHLLAKELAARGLQTTVITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMAALAAQRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDSASGAGSLHVVNPTFDYVPPKLVSLFITDTGGHNPSYMYRLIADYYSADDLVVKRRPTTGS*

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