Glyma.07g089500

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Report for Sequence Feature Glyma.07g089500

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8365835
stop:	8368337
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07g089500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68660.1	AT	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein	JGI	N/A	IEA
GO:0030163	GO-bp	protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0030163	GO-bp	protein catabolic process	JGI	N/A	IEA
PF02617	PFAM	ATP-dependent Clp protease adaptor protein ClpS	JGI	N/A	IEA

Expression Patterns of Glyma.07g089500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g089500 not represented in the dataset	Glyma.07g089500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07g089500

Paralog	Evidence	Comments
Glyma.09g187300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g089500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma07g09880	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07g089500

Limit To All Plant Sequences

>Glyma.07g089500.2 sequence-type=transcript locus=Glyma.07g089500 ID=Glyma.07g089500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGATATAATTTTCATTTTATGCACCCTTAGTAAATCGAAAGGGTTCATATTTTGATTGCTATTAGTTTTGTAATCGCAGGAGATAAAAATGTTCCTTTGAAATATAGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAATATTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTGAGGAAATCGCGGAAAACATCCCCACCCTACCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCAGGAATGACCATTGATAATGCGGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATAGTATGTGCTCAAGTGGATGCTGAAGATCACTGCATGCAGTTAAGAGGAAACGGCCTTTTAAGTTCTATTGAGCCAGCTGATGGTGGTGGTTGTTGATACATAGAGAGACCATTGACATGATGAGCTTTGGCCTAATAGTTTCATTGAAGAAGTGACATATCACATATCATATACACATTTCCATGATGTTCATCTTTCCAACCACTGAAGATGGTTGTATAGAAAATTATTGACTAGGTAAGGAAAGGGATAGTGCTAGTTAGTTAGTAGTTAGTACTTATACAGGACATAATTTGCTACCAGCCAGTGGCATTATTTGGATTTAACGTGTTATACTATCATTAGTCCCTATATTTCCACTTTTTTCATTGAAGCAAGCCTCTTATATAAGCAATAACCTGAACATAGCCTATAATATTGG

Coding sequences of Glyma.07g089500

Limit To All Plant Sequences

>Glyma.07g089500.1 sequence-type=CDS polypeptide=Glyma.07g089500.1.p locus=Glyma.07g089500 ID=Glyma.07g089500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCTGCATTATGCAGTGCACTTGCTCTTTCACCCAACCAAGTATTCAACGCAGCAAATCCTGGAGATAAAAATGTTCCTTTGAAATATAGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAATATTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTGAGGAAATCGCGGAAAACATCCCCACCCTACCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCAGGAATGACCATTGATAATGCGGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATAGTATGTGCTCAAGTGGATGCTGAAGATCACTGCATGCAGTTAAGAGGAAACGGCCTTTTAAGTTCTATTGAGCCAGCTGATGGTGGTGGTTGTTGA

>Glyma.07g089500.2 sequence-type=CDS polypeptide=Glyma.07g089500.2.p locus=Glyma.07g089500 ID=Glyma.07g089500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGTGGCAGCCACTGGAATATTAGGGAAAGGTGGTGGGTTGTTGGAGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTGAGGAAATCGCGGAAAACATCCCCACCCTACCGAGTTTTGCTGCACAATGACAACTTCAACAAGCGAGAATATGTTGTGCAAGTGTTGATGAAGGTGATACCAGGAATGACCATTGATAATGCGGTTAACATCATGCAGGAGGCACATTATAATGGACTAGCAGTGGTGATAGTATGTGCTCAAGTGGATGCTGAAGATCACTGCATGCAGTTAAGAGGAAACGGCCTTTTAAGTTCTATTGAGCCAGCTGATGGTGGTGGTTGTTGA

Predicted protein sequences of Glyma.07g089500

Limit To All Plant Sequences

>Glyma.07g089500.1.p sequence-type=predicted peptide transcript=Glyma.07g089500.1 locus=Glyma.07g089500 ID=Glyma.07g089500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAALCSALALSPNQVFNAANPGDKNVPLKYSKDRSVVMTVAATGILGKGGGLLERPTIETTSPGRESEFDLRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTIDNAVNIMQEAHYNGLAVVIVCAQVDAEDHCMQLRGNGLLSSIEPADGGGC*

>Glyma.07g089500.2.p sequence-type=predicted peptide transcript=Glyma.07g089500.2 locus=Glyma.07g089500 ID=Glyma.07g089500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTVAATGILGKGGGLLERPTIETTSPGRESEFDLRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTIDNAVNIMQEAHYNGLAVVIVCAQVDAEDHCMQLRGNGLLSSIEPADGGGC*

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