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Report for Sequence Feature Glyma.07g060400

Feature Type:gene_model
Chromosome:Gm07
Start:5358317
stop:5363410
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g060400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46270.1AT G-box binding factor 3 JGI N/AIEA
AT2G46270.2AT G-box binding factor 3 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI N/AIEA
PTHR22952:SF6Panther G-BOX-BINDING FACTOR 2-RELATED JGI N/AIEA
PTHR22952:SF73Panther JGI N/AIEA
PF00170PFAM bZIP transcription factor JGI N/AIEA
PF07777PFAM G-box binding protein MFMR JGI N/AIEA

Proteins Associated with Glyma.07g060400
LocusGene SymbolProtein Name
BZIP64 bZIP transcription factor bZIP64
bZIP58 Basic leucine zipper transcription factor-like protein gene 58

Expression Patterns of Glyma.07g060400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g060400
ParalogEvidenceComments
Glyma.16g029000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g060400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g06620 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g060400
>Glyma.07g060400.2 sequence-type=transcript locus=Glyma.07g060400 ID=Glyma.07g060400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTAACTAATCATTATTAATGGAGTAAACCAAATTTCTCACTGTTATACTGTTGCTAGAAGCCTAGACCCTCTTTCACACCTTTGATGTATCATGTATTGCTGTATTTCATTCTTGCATCCAAGTCTAATGTTTTGCTTATGAACGTTGGAATTTTCAAGAGTGAGAGATTATGTTGTAGACTTTGAATTTTGAATAACTTGTTGGGACATATTTGACTCGGTGCTTTTCTTTTGGTGCTTGCCTCATGGGAAACAGTGAGGATGAGAAATCTGTTAAGACTGGAAGCCCTTCTTCTTCACCTGCAACAACTGATCAGACCAACCAACCTAATATTCATGTCTATCCTGATTGGGCTGCCATGCAGTATTATGGGCCAAGAGTCAACATTCCACCATACTTCAACTCAGCTGTGGCTTCAGGTCATGCTCCACACCCATACATGTGGGGACCACCACAGCCTATGATGCCACCTTATGGGCCACCTTATGCAGCATTTTATTCGCATGGAGGGGTTTATACTCACCCTGCAGTTGCTATTGGGCCACACTTACATGGTCAAGGAGTTTCATCTTCACCTGCTGTTGGGACTCATTCAAGCATAGAATCACCAACCAAATTATCTGGAAATACTGATCAGGGTTTAATGAAGAAATCAAAAGGGTTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCTGAGAGTGCTGAGCATGGAGCTGAGAACAGGCAGTCACAGAGTGTGGATACTGAGGGTTACAGCGACGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAAGGAAAAGATGCCGAGAGGGAACACTGACCACTGATGGAGAAGGGAAAACTGAGCTACAAAATGGTCCGGCTTCCAAAGAGACTTCATCTTCCAAAAAGATTGTGTCAGCTACTCCAGCTAGTGTTGCCGGAACATTAGTTGGACCTGTAGTTTCTTCAGTTATGGCCACAACACTGGAACTGAGGAACCCTTCGACTGTTGATTCTAAGGCAAATTCCACAAGTGCCCCACAACCTTGTGCAATTGTGCCTAATGAAACTTGCTTACAGAATGAGCGTGAGCTGAAACGGGAGAGGAGAAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAGACTGAAGAATTGGCACGAAAAGTTGATATGTTAACTGCTGAGAATGTGTCCCTGAAGTCAGAAATAATTCAACTGACTGAAGGTTCTGAGCAGATGAGGATGGAAAATTCTGCATTGAGGGAAAAACTGAGAAATACTCAACTGGGACAAAGGGAAGAGATAATTTTGAGTAGCATCGAGAGTAAGAGGGCTGCACCTGTAAGTACAGAAAACTTGTTATCAAGAGTTAATAATTCTAGTTCTAATGACAGAACTACAGAGAATGAGAATGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTATTGGATACAAATCCTAGAGCAGATGCTGTGGCAGCTGGTTGAAACCAGTAACTGCACTGGCTGATTATGCAATTTTGGCATATTACAAGCCCAAAATTACAGCTTGGTGCTAACAGTTTTCAGAGGGATGGATCAGCTGAATTTTACAATCTAAATCCATCTATGTAGACCAGAACTAATTCTTTGCTTGTCAGTTTCTTAGGACATAAACTCTGTATTTTACTAGATTTCACACAATTGGATGACAACTTTAAAAGTTTGTAAATCGAAGAGTATTAGGGATTTAGTTTAGACTTTTAAGAGAGGGTTGTCTGCCGCTGTATAATTGGTTATGCATTAACTATATTGGTGTGAACTTTCTAATGGGATCTTAGTCAAGGTATTCTGACTTTTTGTTAGTTTTGGTTTTGTATACTTTAAAGCAATTCCTC

>Glyma.07g060400.3 sequence-type=transcript locus=Glyma.07g060400 ID=Glyma.07g060400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTACCATTACCATTTCTGTGGGttttttatttttatttttttatttttatgtttCTGGTATACATCTTAGATGGCAGGGATGAATAATTTGGCAACTTATTTTTCTTCCAGCCTATGATGCCACCTTATGGGCCACCTTATGCAGCATTTTATTCGCATGGAGGGGTTTATACTCACCCTGCAGTTGCTATTGGGCCACACTTACATGGTCAAGGAGTTTCATCTTCACCTGCTGTTGGGACTCATTCAAGCATAGAATCACCAACCAAATTATCTGGAAATACTGATCAGGGTTTAATGAAGAAATCAAAAGGGTTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCTGAGAGTGCTGAGCATGGAGCTGAGAACAGGCAGTCACAGAGTGTGGATACTGAGGGTTACAGCGACGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAAGGAAAAGATGCCGAGAGGGAACACTGACCACTGATGGAGAAGGGAAAACTGAGCTACAAAATGGTCCGGCTTCCAAAGAGACTTCATCTTCCAAAAAGATTGTGTCAGCTACTCCAGCTAGTGTTGCCGGAACATTAGTTGGACCTGTAGTTTCTTCAGTTATGGCCACAACACTGGAACTGAGGAACCCTTCGACTGTTGATTCTAAGGCAAATTCCACAAGTGCCCCACAACCTTGTGCAATTGTGCCTAATGAAACTTGCTTACAGAATGAGCGTGAGCTGAAACGGGAGAGGAGAAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAGACTGAAGAATTGGCACGAAAAGTTGATATGTTAACTGCTGAGAATGTGTCCCTGAAGTCAGAAATAATTCAACTGACTGAAGGTTCTGAGCAGATGAGGATGGAAAATTCTGCATTGAGGGAAAAACTGAGAAATACTCAACTGGGACAAAGGGAAGAGATAATTTTGAGTAGCATCGAGAGTAAGAGGGCTGCACCTGTAAGTACAGAAAACTTGTTATCAAGAGTTAATAATTCTAGTTCTAATGACAGAACTACAGAGAATGAGAATGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTATTGGATACAAATCCTAGAGCAGATGCTGTGGCAGCTGGTTGAAACCAGTAACTGCACTGGCTGATTATGCAATTTTGGCATATTACAAGCCCAAAATTACAGCTTGGTGCTAACAGTTTTCAGAGGGATGGATCAGCTGAATTTTACAATCTAAATCCATCTATGTAGACCAGAACTAATTCTTTGCTTGTCAGTTTCTTAGGACATAAACTCTGTATTTTACTAGATTTCACACAATTGGATGACAACTTTAAAAGTTTGTAAATCGAAGAGTATTAGGGATTTAGTTTAGACTTTTAAGAGAGGGTTGTCTGCCGCTGTATAATTGGTTATGCATTAACTATATTGGTGTGAACTTTCTAATGGGATCTTAGTCAAGGTATTCTGACTTTTTGTTAGTTTTGGTTTTGTATACTTTAAAGCAATTCCTCATGTTGTGGCTGTGGTTGCCTTTTACCATGTGTTT
Coding sequences of Glyma.07g060400
>Glyma.07g060400.1 sequence-type=CDS polypeptide=Glyma.07g060400.1.p locus=Glyma.07g060400 ID=Glyma.07g060400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAACAGTGAGGATGAGAAATCTGTTAAGACTGGAAGCCCTTCTTCTTCACCTGCAACAACTGATCAGACCAACCAACCTAATATTCATGTCTATCCTGATTGGGCTGCCATGCAGTATTATGGGCCAAGAGTCAACATTCCACCATACTTCAACTCAGCTGTGGCTTCAGGTCATGCTCCACACCCATACATGTGGGGACCACCACAGCCTATGATGCCACCTTATGGGCCACCTTATGCAGCATTTTATTCGCATGGAGGGGTTTATACTCACCCTGCAGTTGCTATTGGGCCACACTTACATGGTCAAGGAGTTTCATCTTCACCTGCTGTTGGGACTCATTCAAGCATAGAATCACCAACCAAATTATCTGGAAATACTGATCAGGGTTTAATGAAGAAATCAAAAGGGTTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCTGAGAGTGCTGAGCATGGAGCTGAGAACAGGCAGTCACAGAGTGTGGATACTGAGGGTTACAGCGACGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAAGGAAAAGATGCCGAGAGGGAACACTGACCACTGATGGAGAAGGGAAAACTGAGCTACAAAATGGTCCGGCTTCCAAAGAGACTTCATCTTCCAAAAAGATTGTGTCAGCTACTCCAGCTAGTGTTGCCGGAACATTAGTTGGACCTGTAGTTTCTTCAGTTATGGCCACAACACTGGAACTGAGGAACCCTTCGACTGTTGATTCTAAGGCAAATTCCACAAGTGCCCCACAACCTTGTGCAATTGTGCCTAATGAAACTTGCTTACAGAATGAGCGTGAGCTGAAACGGGAGAGGAGAAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAGACTGAAGAATTGGCACGAAAAGTTGATATGTTAACTGCTGAGAATGTGTCCCTGAAGTCAGAAATAATTCAACTGACTGAAGGTTCTGAGCAGATGAGGATGGAAAATTCTGCATTGAGGGAAAAACTGAGAAATACTCAACTGGGACAAAGGGAAGAGATAATTTTGAGTAGCATCGAGAGTAAGAGGGCTGCACCTGTAAGTACAGAAAACTTGTTATCAAGAGTTAATAATTCTAGTTCTAATGACAGAACTACAGAGAATGAGAATGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTATTGGATACAAATCCTAGAGCAGATGCTGTGGCAGCTGGTTGA

>Glyma.07g060400.2 sequence-type=CDS polypeptide=Glyma.07g060400.2.p locus=Glyma.07g060400 ID=Glyma.07g060400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAACAGTGAGGATGAGAAATCTGTTAAGACTGGAAGCCCTTCTTCTTCACCTGCAACAACTGATCAGACCAACCAACCTAATATTCATGTCTATCCTGATTGGGCTGCCATGCAGTATTATGGGCCAAGAGTCAACATTCCACCATACTTCAACTCAGCTGTGGCTTCAGGTCATGCTCCACACCCATACATGTGGGGACCACCACAGCCTATGATGCCACCTTATGGGCCACCTTATGCAGCATTTTATTCGCATGGAGGGGTTTATACTCACCCTGCAGTTGCTATTGGGCCACACTTACATGGTCAAGGAGTTTCATCTTCACCTGCTGTTGGGACTCATTCAAGCATAGAATCACCAACCAAATTATCTGGAAATACTGATCAGGGTTTAATGAAGAAATCAAAAGGGTTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCTGAGAGTGCTGAGCATGGAGCTGAGAACAGGCAGTCACAGAGTGTGGATACTGAGGGTTACAGCGACGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAAGGAAAAGATGCCGAGAGGGAACACTGACCACTGATGGAGAAGGGAAAACTGAGCTACAAAATGGTCCGGCTTCCAAAGAGACTTCATCTTCCAAAAAGATTGTGTCAGCTACTCCAGCTAGTGTTGCCGGAACATTAGTTGGACCTGTAGTTTCTTCAGTTATGGCCACAACACTGGAACTGAGGAACCCTTCGACTGTTGATTCTAAGGCAAATTCCACAAGTGCCCCACAACCTTGTGCAATTGTGCCTAATGAAACTTGCTTACAGAATGAGCGTGAGCTGAAACGGGAGAGGAGAAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAGACTGAAGAATTGGCACGAAAAGTTGATATGTTAACTGCTGAGAATGTGTCCCTGAAGTCAGAAATAATTCAACTGACTGAAGGTTCTGAGCAGATGAGGATGGAAAATTCTGCATTGAGGGAAAAACTGAGAAATACTCAACTGGGACAAAGGGAAGAGATAATTTTGAGTAGCATCGAGAGTAAGAGGGCTGCACCTGTAAGTACAGAAAACTTGTTATCAAGAGTTAATAATTCTAGTTCTAATGACAGAACTACAGAGAATGAGAATGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTATTGGATACAAATCCTAGAGCAGATGCTGTGGCAGCTGGTTGA

>Glyma.07g060400.3 sequence-type=CDS polypeptide=Glyma.07g060400.3.p locus=Glyma.07g060400 ID=Glyma.07g060400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCCACCTTATGGGCCACCTTATGCAGCATTTTATTCGCATGGAGGGGTTTATACTCACCCTGCAGTTGCTATTGGGCCACACTTACATGGTCAAGGAGTTTCATCTTCACCTGCTGTTGGGACTCATTCAAGCATAGAATCACCAACCAAATTATCTGGAAATACTGATCAGGGTTTAATGAAGAAATCAAAAGGGTTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCTGAGAGTGCTGAGCATGGAGCTGAGAACAGGCAGTCACAGAGTGTGGATACTGAGGGTTACAGCGACGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAAGGAAAAGATGCCGAGAGGGAACACTGACCACTGATGGAGAAGGGAAAACTGAGCTACAAAATGGTCCGGCTTCCAAAGAGACTTCATCTTCCAAAAAGATTGTGTCAGCTACTCCAGCTAGTGTTGCCGGAACATTAGTTGGACCTGTAGTTTCTTCAGTTATGGCCACAACACTGGAACTGAGGAACCCTTCGACTGTTGATTCTAAGGCAAATTCCACAAGTGCCCCACAACCTTGTGCAATTGTGCCTAATGAAACTTGCTTACAGAATGAGCGTGAGCTGAAACGGGAGAGGAGAAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAGACTGAAGAATTGGCACGAAAAGTTGATATGTTAACTGCTGAGAATGTGTCCCTGAAGTCAGAAATAATTCAACTGACTGAAGGTTCTGAGCAGATGAGGATGGAAAATTCTGCATTGAGGGAAAAACTGAGAAATACTCAACTGGGACAAAGGGAAGAGATAATTTTGAGTAGCATCGAGAGTAAGAGGGCTGCACCTGTAAGTACAGAAAACTTGTTATCAAGAGTTAATAATTCTAGTTCTAATGACAGAACTACAGAGAATGAGAATGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTATTGGATACAAATCCTAGAGCAGATGCTGTGGCAGCTGGTTGA
Predicted protein sequences of Glyma.07g060400
>Glyma.07g060400.1.p sequence-type=predicted peptide transcript=Glyma.07g060400.1 locus=Glyma.07g060400 ID=Glyma.07g060400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNSEDEKSVKTGSPSSSPATTDQTNQPNIHVYPDWAAMQYYGPRVNIPPYFNSAVASGHAPHPYMWGPPQPMMPPYGPPYAAFYSHGGVYTHPAVAIGPHLHGQGVSSSPAVGTHSSIESPTKLSGNTDQGLMKKSKGFDGLAMSIGNCNAESAEHGAENRQSQSVDTEGYSDGSDGNTAGANQTKRKRCREGTLTTDGEGKTELQNGPASKETSSSKKIVSATPASVAGTLVGPVVSSVMATTLELRNPSTVDSKANSTSAPQPCAIVPNETCLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVDMLTAENVSLKSEIIQLTEGSEQMRMENSALREKLRNTQLGQREEIILSSIESKRAAPVSTENLLSRVNNSSSNDRTTENENDFCENKPNSGAKLHQLLDTNPRADAVAAG*

>Glyma.07g060400.2.p sequence-type=predicted peptide transcript=Glyma.07g060400.2 locus=Glyma.07g060400 ID=Glyma.07g060400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNSEDEKSVKTGSPSSSPATTDQTNQPNIHVYPDWAAMQYYGPRVNIPPYFNSAVASGHAPHPYMWGPPQPMMPPYGPPYAAFYSHGGVYTHPAVAIGPHLHGQGVSSSPAVGTHSSIESPTKLSGNTDQGLMKKSKGFDGLAMSIGNCNAESAEHGAENRQSQSVDTEGYSDGSDGNTAGANQTKRKRCREGTLTTDGEGKTELQNGPASKETSSSKKIVSATPASVAGTLVGPVVSSVMATTLELRNPSTVDSKANSTSAPQPCAIVPNETCLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVDMLTAENVSLKSEIIQLTEGSEQMRMENSALREKLRNTQLGQREEIILSSIESKRAAPVSTENLLSRVNNSSSNDRTTENENDFCENKPNSGAKLHQLLDTNPRADAVAAG*

>Glyma.07g060400.3.p sequence-type=predicted peptide transcript=Glyma.07g060400.3 locus=Glyma.07g060400 ID=Glyma.07g060400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMPPYGPPYAAFYSHGGVYTHPAVAIGPHLHGQGVSSSPAVGTHSSIESPTKLSGNTDQGLMKKSKGFDGLAMSIGNCNAESAEHGAENRQSQSVDTEGYSDGSDGNTAGANQTKRKRCREGTLTTDGEGKTELQNGPASKETSSSKKIVSATPASVAGTLVGPVVSSVMATTLELRNPSTVDSKANSTSAPQPCAIVPNETCLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVDMLTAENVSLKSEIIQLTEGSEQMRMENSALREKLRNTQLGQREEIILSSIESKRAAPVSTENLLSRVNNSSSNDRTTENENDFCENKPNSGAKLHQLLDTNPRADAVAAG*






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