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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46760.1 | AT | D-arabinono-1,4-lactone oxidase family protein | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003885 | GO-mf | D-arabinono-1,4-lactone oxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0003885 | GO-mf | D-arabinono-1,4-lactone oxidase activity | JGI | N/A | IEA |
| GO:0008762 | GO-mf | UDP-N-acetylmuramate dehydrogenase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016614 | GO-mf | oxidoreductase activity, acting on CH-OH group of donors | EnsemblGenomes | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | JGI | N/A | IEA |
| GO:0071949 | GO-mf | FAD binding | EnsemblGenomes | N/A | IEA |
| KOG4730 | KOG | D-arabinono-1, 4-lactone oxidase | JGI | N/A | IEA |
| PTHR13878 | Panther | GULONOLACTONE OXIDASE | JGI | N/A | IEA |
| PTHR13878:SF10 | Panther | JGI | N/A | IEA | |
| PF01565 | PFAM | FAD binding domain | JGI | N/A | IEA |
| PF04030 | PFAM | D-arabinono-1,4-lactone oxidase | JGI | N/A | IEA |
| GN7V-66143 | SoyCyc9-rxn | D-arabinono-1,4-lactone oxidase | Plant Metabolic Network | ISS |
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Glyma.07g050900 not represented in the dataset |
Glyma.07g050900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g019900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g05690 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g050900.1 sequence-type=CDS polypeptide=Glyma.07g050900.1.p locus=Glyma.07g050900 ID=Glyma.07g050900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCATGTTTGTGCTTGAAAAGGATGTCAAACAAAGCCTTCGAATCAACTACTCTTGTCTTTCTTTTACTCTCTGTGGTGTTCTCTACTCCTCCAGAGGATCCAATCAAGTGCACGACTTCAGAGAACACAACTTGTACTATCACAAACTCCTATGGTTCCTTCCCTGATCGAAGCATTTGCAAAGCTGCTCAAGTGTTATACCCCACCACTGAGCAAGAGCTTGTGTCTGTTGTTGCATCAGCAACCAGAAACAAAACCAAAATGAAAATAGCTACCCGTTATTCCCATAGCATCCCCAAGCTGGTGTGCCCAGATGGCGAAAATGGGATGCTAATTAGCACCAAATATCTCAACAAAATTGTGAAGGTTGATGTAGAAGCAAATACAATGACTGTGGAGAGTGGTGTGACTCTGCAACAGTTTATCAATGAGGCTGCAAAGGTAGGGTTGGCCTTGCCATATGCACCATATTGGTGGGGTGTGACAATTGGAGGGCTAATGGGAACTGGTGCACATGGAAGCACTTTGCGGGGGAAGGGAAGTGCTGTCCATGATTATGTTGTGGGGCTTAGGATTGTTAGGCCTGCAGGTCATGAAGATGGTTATGCTAAGGTTGAGAGCCTCAATGAACGACATGAAGATCTTAATGCAACCAAAGTATCACTCGGTGTGTTGGGAGTTATTTCACAGATTACTCTAAAACTAGAACGCCTCTTCAAACGATCCATCACGTATGTGGCAAAAAATGATTCAGATTTGGGAGACCAAGTTGCTGCTTTTGGACATGCACATGAGTTTGCAGATATAATGTGGTACCCAAGTCAACGCAAGGTTGTCTACCGTGTTGATGATCGTGTTCCATTCAATACATCGGGCAATGGTCTCTATGACTTTATCCCTCTCCGTCCCACTCCTTCAAATATATCGATTTTTAGGAGAACCACGGAGGATATTCAAGAATCCACAAATGATGCCATTGGAAAGTGCATAGATGCTAATGCCTCATCGAATGCCCTATTCACCGTAGCTTATGGACTTACTAACAATGGTATAAGCTTCACTGGATACCCTGTAATTGGATTTCAGAACCACCTTCAGTCATCTGGGTCATGCTTGGATAGTCCTCAAGATGCATTGATCACAACATGTGGCTGGGATCCTAGGGTGGAGGGCTTGTTCTATTACAATACCGCATTTAGCATTAGGTTGTCTGTTGTAAAAAAATTTATTGAAGATGTGCAAAAGCTAGTTCAATTGGAGCCAAAGGGATTATGTATATTAGGGCTTTACAATGGAATTGTCATGCGCTATGTCACCGCTTCAAGTGCCTACTTGGGAAAGCAGGAGGATGCTTTAGAATTTGATTTCTTGTACTACCGTAGCAGAGACCCAATGACTCCCAGGCTTTATGAAGACATTCTTGAAGAGGTTGAACAACTTGGGATTTTTAAATATGGAGGACTACCTCATTGGGGTAAGAATAGGAACTTGGCATTTCAAGGAGTCATCAAAAAGTACAAAAACGCAAAGAAATTTTTGAAGGTTAAAAACAAGTATGATCCAAAAGGACTTTTCTCAAATACATGGACAGACCAAGTGCTTGGGCTAAAGGATGGAGTGACAATATTGAAGGATGGGTGTGCATTAGAAGGTTTGTGCATTTGTTCACAGGATAGTCATTGCAATCCAAGCAAAGGTTACTATTGCAGGCCAGGCAAGGTTTACAAGAAAGCAAGAGTTTGTACTCATTTGAAATAA
>Glyma.07g050900.1.p sequence-type=predicted peptide transcript=Glyma.07g050900.1 locus=Glyma.07g050900 ID=Glyma.07g050900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MACLCLKRMSNKAFESTTLVFLLLSVVFSTPPEDPIKCTTSENTTCTITNSYGSFPDRSICKAAQVLYPTTEQELVSVVASATRNKTKMKIATRYSHSIPKLVCPDGENGMLISTKYLNKIVKVDVEANTMTVESGVTLQQFINEAAKVGLALPYAPYWWGVTIGGLMGTGAHGSTLRGKGSAVHDYVVGLRIVRPAGHEDGYAKVESLNERHEDLNATKVSLGVLGVISQITLKLERLFKRSITYVAKNDSDLGDQVAAFGHAHEFADIMWYPSQRKVVYRVDDRVPFNTSGNGLYDFIPLRPTPSNISIFRRTTEDIQESTNDAIGKCIDANASSNALFTVAYGLTNNGISFTGYPVIGFQNHLQSSGSCLDSPQDALITTCGWDPRVEGLFYYNTAFSIRLSVVKKFIEDVQKLVQLEPKGLCILGLYNGIVMRYVTASSAYLGKQEDALEFDFLYYRSRDPMTPRLYEDILEEVEQLGIFKYGGLPHWGKNRNLAFQGVIKKYKNAKKFLKVKNKYDPKGLFSNTWTDQVLGLKDGVTILKDGCALEGLCICSQDSHCNPSKGYYCRPGKVYKKARVCTHLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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