SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.07g049500

Feature Type:gene_model
Chromosome:Gm07
Start:4191822
stop:4194667
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.07g049500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01080.1AT JGI N/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
K13126KEGG Spliceosome JGI N/AIEA
KOG0114 KOG Predicted RNA-binding protein (RRM superfamily) JGI N/AIEA
KOG0131 KOG Splicing factor 3b, subunit 4 JGI N/AIEA
KOG0146 KOG RNA-binding protein ETR-3 (RRM superfamily) JGI N/AIEA
KOG4206 KOG Spliceosomal protein snRNP-U1A/U2B JGI N/AIEA
PTHR24012PantherFam RNA BINDING PROTEIN JGI N/AIEA
PF00076Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA

Gene model name correspondences to Glyma.07g049500 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g05540 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g049500
>Glyma.07g049500.1 sequence-type=CDS polypeptide=Glyma.07g049500.1.p locus=Glyma.07g049500 id=Glyma.07g049500.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGCCACCCTTCGTTGTTACACCCTCTTCTTCTTCTTCTTCCGTGCTCACCCCGAAACTGTGCAATCCTCAAGTGAAACGATTCGTTTTGCAGTTCGCGTATCCAAAGCGTTCGCGCACATTTCTAGAACCTTCTTCTTCTTCTTCTTTCTCTCCTATGAGGAAAACTAAGGAGGAGGTGGTTGAAGAACGGCTTTACAGAGAAGAATATGTCCACCCTCGAAACGATGACGTTTTGGAGGACGAAGAAGAACGAGACAAGAGGCTTGGAAAAGCGTGTGAAGTGTACGTGTGCAACCTGCCCCGAAGATGTGACGCAACATACTTGCTTGATATGTTCAGGCCCTATGGAACCATTCTATCTGTCGAGGTTTGCCGGGATGCTGAGACTAATGAAAGTAAGGGGTGTGGTTATGTGACACTGGGATCTATATATTCAGCAAGAAATGCAGTTGCTGCATTGGATGGATCAGATGTTGGTGGGCGCGAATTGCGGGTTAGATTTTCAATTGAGATGAATTCTAAAAGGAGGAGTTTTAATAAAATGAACTCTTCCACCAAGAGAATTTCATACTATGAATCACCTCATAAGCTGTATGTTGGCAATCTTGCCAAGACTGTTAGACCTGAACAGTTGAGAGATCTCTTTAGCAGATTTGGAAATGTGGTTAGTGCAAGAGTGTTGCATGATTTTAAACAAGGGAACAGCCGAGTCTATGCCTTTCTCTCCTTTCAATCAGAGGCAGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATATTATGGACGTACACTAATCGTTAAAGAGGGTGTAGAGAGGAGTGAGGACTGA
Predicted protein sequences of Glyma.07g049500
>Glyma.07g049500.1.p sequence-type=predicted peptide transcript=Glyma.07g049500.1 locus=Glyma.07g049500 id=Glyma.07g049500.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MPPFVVTPSSSSSSVLTPKLCNPQVKRFVLQFAYPKRSRTFLEPSSSSSFSPMRKTKEEVVEERLYREEYVHPRNDDVLEDEEERDKRLGKACEVYVCNLPRRCDATYLLDMFRPYGTILSVEVCRDAETNESKGCGYVTLGSIYSARNAVAALDGSDVGGRELRVRFSIEMNSKRRSFNKMNSSTKRISYYESPHKLYVGNLAKTVRPEQLRDLFSRFGNVVSARVLHDFKQGNSRVYAFLSFQSEAERDAAMSLNGTEYYGRTLIVKEGVERSED*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo