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Report for Sequence Feature Glyma.07g047800

Feature Type:gene_model
Chromosome:Gm07
Start:4004367
stop:4008503
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g047800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02270.1AT Calcium-binding endonuclease/exonuclease/phosphatase family JGI N/AIEA
AT5G54130.2AT Calcium-binding endonuclease/exonuclease/phosphatase family JGI N/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
KOG2338 KOG Transcriptional effector CCR4-related protein JGI N/AIEA
PTHR12121Panther CARBON CATABOLITE REPRESSOR PROTEIN 4 JGI N/AIEA
PTHR12121:SF15Panther JGI N/AIEA
PF03372PFAM Endonuclease/Exonuclease/phosphatase family JGI N/AIEA

Expression Patterns of Glyma.07g047800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g047800
ParalogEvidenceComments
Glyma.16g016300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g047800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g05340 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g047800
>Glyma.07g047800.2 sequence-type=transcript locus=Glyma.07g047800 ID=Glyma.07g047800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGCACAGTGCTGTAACGCTGAAACCCCAACTTCCCTCTCTCTTATATATAATTGCCTGCTCACCACATCGCTACAACCACAAGAGATAGAATAAGAAGAAGCTAGATTATGTTCCATAGCATTCACTCACATAATAATACGTGACCCATTTCAAAGATTTCGTCTTAAGCACATAAATTTAAGTTCAAAATCTCACCTTTATTGACTGTGGCGAGGATCTTGAGAATGGTTGTGGCTGCGGGTGCTAAGTTCAATTTGAGAAGAGGGAATGGTTCTTCTCATAATGTTGTCAATAGCTATAGCAGTGATGGAGATCTCTGCAGAATTAACAAGAGTGGGTGTTTTTCGTCAGCGGCAGAGGTGGATAGAGACCCTTCTTGTGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGATCCACAGAACCAAGGCCTACGAGAAAGTGACTTCAGATCATTCTGGTTGGACAGGAATAACAGGATTCTTGATTGCTTGCTTTATGAATCATCTTCTATTATGTGCCTTCAGGAGTTTTGGGTTGGAAATGAAGAACTTGTTAACATGTATGAGGAGAAACTTGGGGATGCTGGCTACCATCTCTTCAAGCTTCCTCGAACCAACAATCGCGGAGATGGCCTGCTGACTGCCATACGTAAAGAATGTCTAAGAGTTATGGATTATAAAGAGTTGCTTTTTAACGATTGTGGTGATCGTGTCGCTCAGTTGTTACATGTTCAGTCAGTTACCCCCTTGTTACAAAACCCAAAAGGCTGTGTTCCCCAAGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCATGATTCAAGTCTGTGCGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGTAAGCGTGGACATGTTTACAAGTTCCTTAGGTCACAGGGGTTTGTATCATCATATGATATTGCTAATCGATACAGCGACAGTTATGCAGATGCTCACAAGTGGGTTAGTCACCGAAATCATAGGGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTACGAAAAGCATCAGTGTCTGAAGATGACGCATTTACCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACTTATTTTAGTTTTTCTGAAGCACTCCGTCAGGTGAAGTTAGTTGGTGTGCCTTATGGACTATGCTTTCAACAGTTGCAAGACCTATGGAATCAAGCAGATGTTGATGGAAATGGTGTCATCGACTTTGAAGAATTCAAGCAGAAAATATGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATGTGAATGGGTGCATGGAGGATGGTAACACAGAACAGGAGCAAGAAGCCATTGGTTTTAAGGTGAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTTTCTGATCATGCTAGACTCACAGCTGTGTTTTCAACAGCAAGGATGCGATGTTCTGGCGTACAAAACTGAACGTACTTCATGCCACTAATAGTTTTAGGCTCCACTAGAATCAACCAAAAAAAGAAAAGTGGAAATATAAGGTATAGCCCACAGAAAAATATCAATTTTTGGGACAAGTTTGGTGTAGGGGTAAACTAAAGTGATAATTTTTTTCACTTTCATTTTTGGTTCCTTACCAAACATGTCATGCCATAATTAGTGATTAGTCTGTCTTGTATATGTGTTTGGAGTCAAATTAAAGTAGTGTTATGCTGTAGTCAGTTTTGATAAGCCCTGGCCATGCTTTTTTTTTCTCTGGGAATGGGACAACAATGTAAAGATATTTTTGCAATGTGGAAGTGGATGTGCATATTATCTATTTCCTTTTCCTATTGTTTGGATCCATTGGTTTTGACAAAAAAGGCAATGGCCCATGTAATCTTT
Coding sequences of Glyma.07g047800
>Glyma.07g047800.1 sequence-type=CDS polypeptide=Glyma.07g047800.1.p locus=Glyma.07g047800 ID=Glyma.07g047800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGTGGCTGCGGGTGCTAAGTTCAATTTGAGAAGAGGGAATGGTTCTTCTCATAATGTTGTCAATAGCTATAGCAGTGATGGAGATCTCTGCAGAATTAACAAGAGTGGGTGTTTTTCGTCAGCGGCAGAGGTGGATAGAGACCCTTCTTGTGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGATCCACAGAACCAAGGCCTACGAGAAAGTGACTTCAGATCATTCTGGTTGGACAGGAATAACAGGATTCTTGATTGCTTGCTTTATGAATCATCTTCTATTATGTGCCTTCAGGAGTTTTGGGTTGGAAATGAAGAACTTGTTAACATGTATGAGGAGAAACTTGGGGATGCTGGCTACCATCTCTTCAAGCTTCCTCGAACCAACAATCGCGGAGATGGCCTGCTGACTGCCATACGTAAAGAATGTCTAAGAGTTATGGATTATAAAGAGTTGCTTTTTAACGATTGTGGTGATCGTGTCGCTCAGTTGTTACATGTTCAGTCAGTTACCCCCTTGTTACAAAACCCAAAAGGCTGTGTTCCCCAAGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCATGATTCAAGTCTGTGCGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGTAAGCGTGGACATGTTTACAAGTTCCTTAGGTCACAGGGGTTTGTATCATCATATGATATTGCTAATCGATACAGCGACAGTTATGCAGATGCTCACAAGGTAAATATCTCATTATATAGAATTGTTATATGCTTTCCTGGTATTAAAAGCATAGTCTTGGTAGTTTTTTTTTTTTTTGCTCGAACTTTTAATATTTTCCCATTGATCCTGCAGTGGGTTAGTCACCGAAATCATAGGGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTACGAAAAGCATCAGTGTCTGAAGATGACGCATTTACCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACTTATTTTAGTTTTTCTGAAGCACTCCGTCAGGTGAAGTTAGTTGGTGTGCCTTATGGACTATGCTTTCAACAGTTGCAAGACCTATGGAATCAAGCAGATGTTGATGGAAATGGTGTCATCGACTTTGAAGAATTCAAGCAGAAAATATGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATGTGAATGGGTGCATGGAGGATGGTAACACAGAACAGGAGCAAGAAGCCATTGGTTTTAAGGTGAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTTTCTGATCATGCTAGACTCACAGCTGTGTTTTCAACAGCAAGGATGCGATGTTCTGGCGTACAAAACTGA

>Glyma.07g047800.2 sequence-type=CDS polypeptide=Glyma.07g047800.2.p locus=Glyma.07g047800 ID=Glyma.07g047800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGTGGCTGCGGGTGCTAAGTTCAATTTGAGAAGAGGGAATGGTTCTTCTCATAATGTTGTCAATAGCTATAGCAGTGATGGAGATCTCTGCAGAATTAACAAGAGTGGGTGTTTTTCGTCAGCGGCAGAGGTGGATAGAGACCCTTCTTGTGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGATCCACAGAACCAAGGCCTACGAGAAAGTGACTTCAGATCATTCTGGTTGGACAGGAATAACAGGATTCTTGATTGCTTGCTTTATGAATCATCTTCTATTATGTGCCTTCAGGAGTTTTGGGTTGGAAATGAAGAACTTGTTAACATGTATGAGGAGAAACTTGGGGATGCTGGCTACCATCTCTTCAAGCTTCCTCGAACCAACAATCGCGGAGATGGCCTGCTGACTGCCATACGTAAAGAATGTCTAAGAGTTATGGATTATAAAGAGTTGCTTTTTAACGATTGTGGTGATCGTGTCGCTCAGTTGTTACATGTTCAGTCAGTTACCCCCTTGTTACAAAACCCAAAAGGCTGTGTTCCCCAAGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCATGATTCAAGTCTGTGCGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGTAAGCGTGGACATGTTTACAAGTTCCTTAGGTCACAGGGGTTTGTATCATCATATGATATTGCTAATCGATACAGCGACAGTTATGCAGATGCTCACAAGTGGGTTAGTCACCGAAATCATAGGGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTACGAAAAGCATCAGTGTCTGAAGATGACGCATTTACCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACTTATTTTAGTTTTTCTGAAGCACTCCGTCAGGTGAAGTTAGTTGGTGTGCCTTATGGACTATGCTTTCAACAGTTGCAAGACCTATGGAATCAAGCAGATGTTGATGGAAATGGTGTCATCGACTTTGAAGAATTCAAGCAGAAAATATGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATGTGAATGGGTGCATGGAGGATGGTAACACAGAACAGGAGCAAGAAGCCATTGGTTTTAAGGTGAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTTTCTGATCATGCTAGACTCACAGCTGTGTTTTCAACAGCAAGGATGCGATGTTCTGGCGTACAAAACTGA
Predicted protein sequences of Glyma.07g047800
>Glyma.07g047800.1.p sequence-type=predicted peptide transcript=Glyma.07g047800.1 locus=Glyma.07g047800 ID=Glyma.07g047800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVAAGAKFNLRRGNGSSHNVVNSYSSDGDLCRINKSGCFSSAAEVDRDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFRSFWLDRNNRILDCLLYESSSIMCLQEFWVGNEELVNMYEEKLGDAGYHLFKLPRTNNRGDGLLTAIRKECLRVMDYKELLFNDCGDRVAQLLHVQSVTPLLQNPKGCVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANRYSDSYADAHKVNISLYRIVICFPGIKSIVLVVFFFFARTFNIFPLILQWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASVSEDDAFTFLKGDNYADSVTYFSFSEALRQVKLVGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKQKIWNSTCPEHVLENVNGCMEDGNTEQEQEAIGFKVKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSTARMRCSGVQN*

>Glyma.07g047800.2.p sequence-type=predicted peptide transcript=Glyma.07g047800.2 locus=Glyma.07g047800 ID=Glyma.07g047800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVVAAGAKFNLRRGNGSSHNVVNSYSSDGDLCRINKSGCFSSAAEVDRDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFRSFWLDRNNRILDCLLYESSSIMCLQEFWVGNEELVNMYEEKLGDAGYHLFKLPRTNNRGDGLLTAIRKECLRVMDYKELLFNDCGDRVAQLLHVQSVTPLLQNPKGCVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANRYSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASVSEDDAFTFLKGDNYADSVTYFSFSEALRQVKLVGVPYGLCFQQLQDLWNQADVDGNGVIDFEEFKQKIWNSTCPEHVLENVNGCMEDGNTEQEQEAIGFKVKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSTARMRCSGVQN*






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