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Report for Sequence Feature Glyma.07g047700

Feature Type:gene_model
Chromosome:Gm07
Start:3995501
stop:3999612
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g047700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01560.1AT Ribosomal RNA processing Brix domain protein JGI N/AIEA
GO:0000027GO-bp ribosomal large subunit assembly EnsemblGenomesN/AIEA
GO:0000460GO-bp maturation of 5.8S rRNA EnsemblGenomesN/AIEA
GO:0000470GO-bp maturation of LSU-rRNA EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0030687GO-cc preribosome, large subunit precursor EnsemblGenomesN/AIEA
GO:0042134GO-mf rRNA primary transcript binding EnsemblGenomesN/AIEA
KOG2780 KOG Ribosome biogenesis protein RPF1, contains IMP4 domain JGI N/AIEA
PTHR22734Panther U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 JGI N/AIEA
PF04427PFAM Brix domain JGI N/AIEA
PF05843PFAM Suppressor of forked protein (Suf) JGI N/AIEA

Expression Patterns of Glyma.07g047700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g047700 not represented in the dataset
Glyma.07g047700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g047700
ParalogEvidenceComments
Glyma.16g016200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g047700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g05330 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g047700
>Glyma.07g047700.2 sequence-type=transcript locus=Glyma.07g047700 ID=Glyma.07g047700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTACCCCTTTTCATAAAACCCTAGCAAGTAAAAACCGTCCCTTTTCGTTTCTGTTCTCTGTGCTTCGAAAACCCTAACTAAACTCGCGTGGTAGCTCCAATGGGAGGAAAGAGGAAGAAGAGCGATGATGATGATGACGTGGAAGCAGAAGCAGAAGCTTCAGGTTGGAAGAAGAAAACGAGAACGACGTCGGAGAGAGAGAAGGAGAAGAAGGAGCCATTGCGTCCTTCGATGATAAAGAACAAGGAGAAGCGATCGGAGCTGCACGCGAAACTGAAGCACCAGAAGAAGCTCGAGAAGCGCGCCAAGGCCAAGGCTCGGGACGCTGCTCTCAAGAAAGCTCTCGAGCTCGGCGAGGAGCCTCCAGAGAAGAAGGTCCCTCGCACTATCGAGAACACGAGGGAACTCGACGAGACCGTTTGCAAGCCCGATGACGAAGAGCAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTCCATTCTACTAGGGGACCTGCTTTTATATCAGAGTTGCTTTCAGTTATACCAAATGCACATTACTTCAAGAGAGGAACATATGATCTGAAAAAGATTGTAGAATATGCAAAGAAGAAGGACTTCACTTCTATTATAGTTGTTCACACCAATCGTAGGGAACCAGATGCTCTTTTAATCATAGGTGTACCTGATGGGCCTACTGCTCATTTCAAGCTCTCGAAACTTGTTTTGCGCAAGGATATCAAGAATCATGGAAATCCAACCGGTCACAAGCCCGAGCTTGTATTGAATAACTTCACAACACGTCTAGGGCATCGAGTTGGAAGGTTGATACAGTCACTTTTCCCACAAGATCCAGAATTTAAAGGCCGGCGAGTAGTCACTTTCCACAACCAGAGAGACTTCATATTCTTCCGGCATCATCGGTATATTTTTGAAACCAAAGAAGTTAAAAAAGCAGAGTCCAAAGGTAAAAAGGACAAAGATGGCGAGAGTGAGAATGTTCCTGAACAGAAAACAATTGCCCGACTTCAGGAATGTGGTCCTCGTTTCACATTAAAATTGATTAGCCTGCAGCATGGAACATTTGACACCAAGGGTGGGGAATATGAGTGGGTTCACAAGCCGGAAATGGACACTAGCCGAAGGAGGTTCTTCCTATGACTTGTTTGGGAAGGTTGCATTTTGGACATCTTTTTTGCTGGAAATAGGTTTTATCCGGTGAAGAGGGTTAATTATCTTGAGGTTGTTGGGATCTTTCAACTTAATTCTGGTGTATCATTTTTTTATTTTTTTTTATTGGGGGCTAAAGTCCTATCATCTCTGTAAGCCGTGAGCAATTTTGACCTTACATCTATTGGTGGTTGAGGAAGAGATAACAAAGGTTTCTTATAAGCAAATATATAAGCAATTTTGTATTATGGTCAAAAATATCAAGTAG
Coding sequences of Glyma.07g047700
>Glyma.07g047700.1 sequence-type=CDS polypeptide=Glyma.07g047700.1.p locus=Glyma.07g047700 ID=Glyma.07g047700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGGAAAGAGGAAGAAGAGCGATGATGATGATGACGTGGAAGCAGAAGCAGAAGCTTCAGGTTGGAAGAAGAAAACGAGAACGACGTCGGAGAGAGAGAAGGAGAAGAAGGAGCCATTGCGTCCTTCGATGATAAAGAACAAGGAGAAGCGATCGGAGCTGCACGCGAAACTGAAGCACCAGAAGAAGCTCGAGAAGCGCGCCAAGGCCAAGGCTCGGGACGCTGCTCTCAAGAAAGCTCTCGAGCTCGGCGAGGAGCCTCCAGAGAAGAAGGTCCCTCGCACTATCGAGAACACGAGGGAACTCGACGAGACCGTTTGCAAGCCCGATGACGAAGAGTTATTTGCTGGAAATGATGCTGATGAATTTGGTCCAATTTTGAATCAGCAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTCCATTCTACTAGGGGACCTGCTTTTATATCAGAGTTGCTTTCAGTTATACCAAATGCACATTACTTCAAGAGAGGAACATATGATCTGAAAAAGATTGTAGAATATGCAAAGAAGAAGGACTTCACTTCTATTATAGTTGTTCACACCAATCGTAGGGAACCAGATGCTCTTTTAATCATAGGTGTACCTGATGGGCCTACTGCTCATTTCAAGCTCTCGAAACTTGTTTTGCGCAAGGATATCAAGAATCATGGAAATCCAACCGGTCACAAGCCCGAGCTTGTATTGAATAACTTCACAACACGTCTAGGGCATCGAGTTGGAAGGTTGATACAGTCACTTTTCCCACAAGATCCAGAATTTAAAGGCCGGCGAGTAGTCACTTTCCACAACCAGAGAGACTTCATATTCTTCCGGCATCATCGGTATATTTTTGAAACCAAAGAAGTTAAAAAAGCAGAGTCCAAAGGTAAAAAGGACAAAGATGGCGAGAGTGAGAATGTTCCTGAACAGAAAACAATTGCCCGACTTCAGGAATGTGGTCCTCGTTTCACATTAAAATTGATTAGCCTGCAGCATGGAACATTTGACACCAAGGGTGGGGAATATGAGTGGGTTCACAAGCCGGAAATGGACACTAGCCGAAGGAGGTTCTTCCTATGA

>Glyma.07g047700.2 sequence-type=CDS polypeptide=Glyma.07g047700.2.p locus=Glyma.07g047700 ID=Glyma.07g047700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGGAAAGAGGAAGAAGAGCGATGATGATGATGACGTGGAAGCAGAAGCAGAAGCTTCAGGTTGGAAGAAGAAAACGAGAACGACGTCGGAGAGAGAGAAGGAGAAGAAGGAGCCATTGCGTCCTTCGATGATAAAGAACAAGGAGAAGCGATCGGAGCTGCACGCGAAACTGAAGCACCAGAAGAAGCTCGAGAAGCGCGCCAAGGCCAAGGCTCGGGACGCTGCTCTCAAGAAAGCTCTCGAGCTCGGCGAGGAGCCTCCAGAGAAGAAGGTCCCTCGCACTATCGAGAACACGAGGGAACTCGACGAGACCGTTTGCAAGCCCGATGACGAAGAGCAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTCCATTCTACTAGGGGACCTGCTTTTATATCAGAGTTGCTTTCAGTTATACCAAATGCACATTACTTCAAGAGAGGAACATATGATCTGAAAAAGATTGTAGAATATGCAAAGAAGAAGGACTTCACTTCTATTATAGTTGTTCACACCAATCGTAGGGAACCAGATGCTCTTTTAATCATAGGTGTACCTGATGGGCCTACTGCTCATTTCAAGCTCTCGAAACTTGTTTTGCGCAAGGATATCAAGAATCATGGAAATCCAACCGGTCACAAGCCCGAGCTTGTATTGAATAACTTCACAACACGTCTAGGGCATCGAGTTGGAAGGTTGATACAGTCACTTTTCCCACAAGATCCAGAATTTAAAGGCCGGCGAGTAGTCACTTTCCACAACCAGAGAGACTTCATATTCTTCCGGCATCATCGGTATATTTTTGAAACCAAAGAAGTTAAAAAAGCAGAGTCCAAAGGTAAAAAGGACAAAGATGGCGAGAGTGAGAATGTTCCTGAACAGAAAACAATTGCCCGACTTCAGGAATGTGGTCCTCGTTTCACATTAAAATTGATTAGCCTGCAGCATGGAACATTTGACACCAAGGGTGGGGAATATGAGTGGGTTCACAAGCCGGAAATGGACACTAGCCGAAGGAGGTTCTTCCTATGA
Predicted protein sequences of Glyma.07g047700
>Glyma.07g047700.1.p sequence-type=predicted peptide transcript=Glyma.07g047700.1 locus=Glyma.07g047700 ID=Glyma.07g047700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGKRKKSDDDDDVEAEAEASGWKKKTRTTSEREKEKKEPLRPSMIKNKEKRSELHAKLKHQKKLEKRAKAKARDAALKKALELGEEPPEKKVPRTIENTRELDETVCKPDDEELFAGNDADEFGPILNQQQTPKILITTCRFHSTRGPAFISELLSVIPNAHYFKRGTYDLKKIVEYAKKKDFTSIIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRKDIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEVKKAESKGKKDKDGESENVPEQKTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL*

>Glyma.07g047700.2.p sequence-type=predicted peptide transcript=Glyma.07g047700.2 locus=Glyma.07g047700 ID=Glyma.07g047700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGKRKKSDDDDDVEAEAEASGWKKKTRTTSEREKEKKEPLRPSMIKNKEKRSELHAKLKHQKKLEKRAKAKARDAALKKALELGEEPPEKKVPRTIENTRELDETVCKPDDEEQQTPKILITTCRFHSTRGPAFISELLSVIPNAHYFKRGTYDLKKIVEYAKKKDFTSIIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRKDIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEVKKAESKGKKDKDGESENVPEQKTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL*






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