Glyma.07g046200

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Report for Sequence Feature Glyma.07g046200

Feature Type:	gene_model
Chromosome:	Gm07
Start:	3879069
stop:	3883801
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07g046200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17280.1	AT	ubiquitin-conjugating enzyme 34	JGI	N/A	IEA
GO:0000209	GO-bp	protein polyubiquitination	EnsemblGenomes	N/A	IEA
GO:0030433	GO-bp	ubiquitin-dependent ERAD pathway	EnsemblGenomes	N/A	IEA
GO:0005783	GO-cc	endoplasmic reticulum	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0016881	GO-mf	acid-amino acid ligase activity	JGI	N/A	IEA
GO:0031625	GO-mf	ubiquitin protein ligase binding	EnsemblGenomes	N/A	IEA
GO:0061630	GO-mf	ubiquitin protein ligase activity	EnsemblGenomes	N/A	IEA
KOG0894	KOG	Ubiquitin-protein ligase	JGI	N/A	IEA
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI	N/A	IEA
PTHR24067:SF14	Panther		JGI	N/A	IEA
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI	N/A	IEA

Expression Patterns of Glyma.07g046200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g046200 not represented in the dataset	Glyma.07g046200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07g046200

Paralog	Evidence	Comments
Glyma.16g014400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g046200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma07g05170	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07g046200

Limit To All Plant Sequences

>Glyma.07g046200.2 sequence-type=transcript locus=Glyma.07g046200 ID=Glyma.07g046200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATGGTGGTGTATAACACTCGATCCAGCACATAACAATGGAAACGCAGCTTTACGTGTTTTCTCTCTAGATTCTGCTCTTAAACGCCGTCGTTTTCAAACTCTTTTTTTCCCCTTCGCTTCTCTGTCTTTGTAACCGAAAGGGGGGAAAATATAATTAACACCGATTTCGCGACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAGTGTAGGGCCTTGTTCTTGATACTGTGCTAAATTTGTTGGATGGCGGAGAAATCATGCATCAAGCGCCTTCAGAAGGAATATAGAGCCCTTTGTAAAGAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGCATATTAACAGGGCTTCTTTCATTCATGATGGACAACAGTCCAACCACTGGCAGTGTAAACACCACCACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAATGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCAACAGCTTTCTGAGCAGGCTGCTCCAGAGAGGGTCTCATCGGATACGTCTCCCGACAAGAGTTCAAGGCCAGTTTTGGAAAAGAAATTAGAATCCAATGGAGAAGACATGAGAAGAGTAGATGGGTTGAAGGAAGTGAGGAAAAACAGAAAACCATTTCCAACGTGGATGATGCTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCATTACCACTGCTTCAGCTGTGATGATAGGCAAAGAAATCTTCATAGGAGGGTATAAGGGGTCCAGAAAGTGTTCTCCTGGAACTGGTACTATATGTTCTGCTAAGGTTGTCATGTCTAACAGAATTTGTATAGGGAAATGAAATGATGAACATGGAGGCTGCGTTTTACTATGGGCTGAATTTACTCCTTTGTGTCTATGTTGCCAGCTTCTTGGTGGTGAATGTTAAGAAGTTACATGCTTGATACTTTTGACTTTCTTCTAAATGTTTTTGAGGTTTGTCTTGTGGTGTTGGTCACCCTGCACGTGCTGCTTGGGTACATTATGCTTTTTAGAATGGGTAAATTATATCCGATAAAACCATAAACGTAATTCGCAGTCAAGTTTTGATCCCTTTAGTGGCAGTGTGTATAAAGACTGAAAAGTTAAGAATGGAATATGCTACTTTCTATGAAGAAATATATGGTACTTGGATTTCTC

Coding sequences of Glyma.07g046200

Limit To All Plant Sequences

>Glyma.07g046200.1 sequence-type=CDS polypeptide=Glyma.07g046200.1.p locus=Glyma.07g046200 ID=Glyma.07g046200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGAAATCATGCATCAAGCGCCTTCAGAAGGAATATAGAGCCCTTTGTAAAGAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGCATATTAACAGGGCTTCTTTCATTCATGATGGACAACAGTCCAACCACTGGCAGTGTAAACACCACCACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAATGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCAACAGCTTTCTGAGCAGGCTGCTCCAGAGAGGGTCTCATCGGATACGTCTCCCGACAAGAGTTCAAGGCCAGTTTTGGAAAAGAAATTAGAATCCAATGGAGAAGACATGAGAAGAGTAGATGGGTTGAAGGAAGTGAGGAAAAACAGAAAACCATTTCCAACGTGGATGATGCTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCATTACCACTGCTTCAGCTGTGA

>Glyma.07g046200.2 sequence-type=CDS polypeptide=Glyma.07g046200.2.p locus=Glyma.07g046200 ID=Glyma.07g046200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTGGCTCGTCCTTCTCCAAGTGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGCATATTAACAGGGCTTCTTTCATTCATGATGGACAACAGTCCAACCACTGGCAGTGTAAACACCACCACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAATGCTACATTCAGGAAGATGTTCCCTGAGTATGTTGAGAAGTACAACCAGCAACAGCTTTCTGAGCAGGCTGCTCCAGAGAGGGTCTCATCGGATACGTCTCCCGACAAGAGTTCAAGGCCAGTTTTGGAAAAGAAATTAGAATCCAATGGAGAAGACATGAGAAGAGTAGATGGGTTGAAGGAAGTGAGGAAAAACAGAAAACCATTTCCAACGTGGATGATGCTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCATTACCACTGCTTCAGCTGTGA

Predicted protein sequences of Glyma.07g046200

Limit To All Plant Sequences

>Glyma.07g046200.1.p sequence-type=predicted peptide transcript=Glyma.07g046200.1 locus=Glyma.07g046200 ID=Glyma.07g046200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQLSEQAAPERVSSDTSPDKSSRPVLEKKLESNGEDMRRVDGLKEVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL*

>Glyma.07g046200.2.p sequence-type=predicted peptide transcript=Glyma.07g046200.2 locus=Glyma.07g046200 ID=Glyma.07g046200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLWLVLLQVIFLSGIMCWREVKEHLLQVDITMEKSSFLLNIHINLLESVHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQLSEQAAPERVSSDTSPDKSSRPVLEKKLESNGEDMRRVDGLKEVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL*

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