SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54130.1 | AT | RELA/SPOT homolog 3 | JGI | N/A | IEA |
| GO:0015969 | GO-bp | guanosine tetraphosphate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0015969 | GO-bp | guanosine tetraphosphate metabolic process | JGI | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0008081 | GO-mf | phosphoric diester hydrolase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| KOG1157 | KOG | Predicted guanosine polyphosphate pyrophosphohydrolase/synthase | JGI | N/A | IEA |
| PTHR21262 | Panther | GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE | JGI | N/A | IEA |
| PF01966 | PFAM | HD domain | JGI | N/A | IEA |
| PF04607 | PFAM | Region found in RelA / SpoT proteins | JGI | N/A | IEA |
| GN7V-59814 | SoyCyc9-rxn | xylan 1,4-β-xylosidase | Plant Metabolic Network | ISS |
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Glyma.07g039600 not represented in the dataset |
Glyma.07g039600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g008400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g04450 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g039600.1 sequence-type=CDS polypeptide=Glyma.07g039600.1.p locus=Glyma.07g039600 ID=Glyma.07g039600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGTTTCTACGATAGCCTTGTACGCGAGTCCACCCAGCGGCGTGTGTTCCACGTCGCACCAGATCAACTGCCACGCTGGCTACGACTTCGAATTGGGGTCGCGATCTTCGTCGCCGGCGGGGTCGACGGCGCCGCCGTCGACCTCGCAGAAGCCAGTGATGGGCGGGCTCTCGTGCCTGTTTTCGTCGCCGGCGCCTCCGCGGAAGCATGCGCCGCAGCTCTCGTCGAACTTTTCCGGCGAGGAGGACGAGATGAAGGAGCTGAGCAGTTCCTTCTCGTATTCTCCGAGCAAATTCGCTGGTTCTTCGTGGAAGAGGGATCAGAGTCCCGTGTCGGTGTTTCATGGTCCTGTTTCGTGTAGCAGTAGTGGTAGAAGTTCCACGGGTTCGACCCCTATTAGAAGTTTCAGGGGTGGGACCAGTGGTTTGTTTGATGGGTTTGTGAGGAATGCGTTGGGGTCTTCATGTTTGGACTATGACTTAGATGCGGGTGATTCTTCTGCTATGGTTGATGAGTTGACCTTCAATTTGGAGGACAATTTCGTGGAGGGTGGGTTTCACTTTGAGCCATATGCTAAAAAGTTGCTTCTTGGGGCGCAAATGAGGCACAAGATCTTCTGTGAGGAGTTTGTTATCAAGGCCTTTTGTGAAGCTGAGAAAGCACACAGAGGGCAGATGCGAGCAAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACTGCTGTGTTGCTGGCTTTGATTGGTGCCAATTCCACTGTTGTGGCGGCGGGGCTCTTGCATGACTCGCTGGATGATGCTTTTCTGACTTATGATTATATAGTTGGGGTGTTTGGCACTGGTGTTGCTGATTTGGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTGGCTCGAGAAAATAATACGGCTAGCAAGTCAGTTGAAGCAGACCGCTTGCATACTATGTTCCTTGGCATGGCAGATGCAAGAGCTGTCCTCGTTAAATTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTGCCAGGGGCCAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTGGGAATTTCTACTTGGAAGGAACAATTAGAAAATTTGTGTTTTAAGCATCTCAACCCAAGCCAGCATGAGGAGCTTTCATCCAAGCTTGTGGAATCGTACGATGATGCAATGATTACTTCTGCAATAGAGAGATTAGAGCAAGCACTTAAAGATGAAGGCATTTCTTATAATGTCATTTCTGGGCGACATAAGAGCTTGTATAGCATTTATTGCAAAATGTTAAAGAAGAAACTTACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGACAAGGAAGAAGACTGTTACAAGGCCTTGACAGTAGTTCATCGATTGTGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGTCCCAAGTTCAATGGATATCAATCTCTGCATACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGGACCAAAGATATGCATTTGCAAGCAGATTTTGGATTTGCTGCTCATTGGAGATACAAGGAAGATGATTGTCAGCATTCTTCGTTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAAGCAATGAGTAGAGATTGTTCATCTGTTGGATATGCTGATTCAGTCAAGCCCCCATGCAAGTTCCCTTCACATGCTGAGGATTGCCCATATTCTTACAAGCCTGATTGTGGTCAGAATGGCCCTGTGTTTGTTATCATGATTGAGAATGATAAGATGTCTGTCCAAGAATTCAGTGCAAACTCAACAGTATTGGATTTGTTGAAAAGATCTGGGAGAGCAAGCTCTAGGTTGACAACATATAGGTTCCCATTGAAGGAAGAGTTGAGGCCAAGGCTGAATCATAAACCCGTTAGTGATCCCAATAGCAAGTTGAAGATGGGAGATGTGATTGAACTTACACCAGCCATACCTGACAAGTCTCTTACAGAATATAGGGAAGAAATCCAGCGTATGTATGATCGCGGGCTAACTGTGTCAAGCATGGGAACCGCCGCAAGCACCATGGCTGGCTCAAGAAGTTGA
>Glyma.07g039600.1.p sequence-type=predicted peptide transcript=Glyma.07g039600.1 locus=Glyma.07g039600 ID=Glyma.07g039600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAVSTIALYASPPSGVCSTSHQINCHAGYDFELGSRSSSPAGSTAPPSTSQKPVMGGLSCLFSSPAPPRKHAPQLSSNFSGEEDEMKELSSSFSYSPSKFAGSSWKRDQSPVSVFHGPVSCSSSGRSSTGSTPIRSFRGGTSGLFDGFVRNALGSSCLDYDLDAGDSSAMVDELTFNLEDNFVEGGFHFEPYAKKLLLGAQMRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDSLDDAFLTYDYIVGVFGTGVADLVEGVSKLSHLSKLARENNTASKSVEADRLHTMFLGMADARAVLVKLADRLHNMMTLDALPGAKQQRFAKETLEIFAPLANRLGISTWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITSAIERLEQALKDEGISYNVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTVVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQADFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSRDCSSVGYADSVKPPCKFPSHAEDCPYSYKPDCGQNGPVFVIMIENDKMSVQEFSANSTVLDLLKRSGRASSRLTTYRFPLKEELRPRLNHKPVSDPNSKLKMGDVIELTPAIPDKSLTEYREEIQRMYDRGLTVSSMGTAASTMAGSRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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