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Report for Sequence Feature Glyma.07g039100

Feature Type:gene_model
Chromosome:Gm07
Start:3222525
stop:3223373
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g039100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20630.1AT germin 3 JGI N/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall EnsemblGenomesN/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00190PFAM Cupin JGI N/AIEA

Proteins Associated with Glyma.07g039100
LocusGene SymbolProtein Name
GER9 germin-like protein 9

Expression Patterns of Glyma.07g039100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.07g039100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g04400 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g039100
>Glyma.07g039100.1 sequence-type=CDS polypeptide=Glyma.07g039100.1.p locus=Glyma.07g039100 ID=Glyma.07g039100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATGATTCACTTTCTTTTCCTCTTTGCTCTTGTCTCGTTCACTTCCCATGCTTCTGTCAATGATTTCTGTGTAGCAGACCTAAAAGGTCCAGATAGCCCTTCAGGCTATCAGTGCAAGCCACCTAACACAGTCACAGTGGATGACTTTGTGTTCTCTGGCTTTGTAGCTGGAAACACCACAAACACTTTCAATGCTGCATTAACCTCCGCATTTGTTACTGATTTTCCAGGTGTGAATGGTCTTGGTGTATCTGCGGCACGGTTAGACATAGCCAAAGGTGGATCAATCCCAATGCACACACACCCTGCTGCCACTGAACTTCTAATAATGGTGGAAGGTCAAATCACTGCTGGTTTTATGACCCCAACTGCACTTTATACCAAGACACTGAAACCTGGAGATATTATGGTTTTTCCACAAGGACAGTTGCATTTTCAGGTTAATTCTGGAAACGGAAAAGCCACTGCTTTTCTGGCATTCAGTAGTGCAAACCCTGGAGCACAACTACTTGACCTTCTGTTATTTGGCAACACCTTGCCTTCTGACTTGGTTGCACAAACTACCTTCCTTGATGTTGCACAAGTCAAGAAACTTAAGGCTCGTTTCGGTGGCAGAGGCTAG
Predicted protein sequences of Glyma.07g039100
>Glyma.07g039100.1.p sequence-type=predicted peptide transcript=Glyma.07g039100.1 locus=Glyma.07g039100 ID=Glyma.07g039100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKMIHFLFLFALVSFTSHASVNDFCVADLKGPDSPSGYQCKPPNTVTVDDFVFSGFVAGNTTNTFNAALTSAFVTDFPGVNGLGVSAARLDIAKGGSIPMHTHPAATELLIMVEGQITAGFMTPTALYTKTLKPGDIMVFPQGQLHFQVNSGNGKATAFLAFSSANPGAQLLDLLLFGNTLPSDLVAQTTFLDVAQVKKLKARFGGRG*






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