Glyma.07g022900

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Report for Sequence Feature Glyma.07g022900

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1759795
stop:	1761820
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07g022900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80860.1	AT	phospholipid N-methyltransferase	JGI	N/A	IEA
GO:0006644	GO-bp	phospholipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0006656	GO-bp	phosphatidylcholine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0032259	GO-bp	methylation	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0008170	GO-mf	N-methyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0008757	GO-mf	S-adenosylmethionine-dependent methyltransferase activity	EnsemblGenomes	N/A	IEA
PTHR15458	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR15458:SF7	Panther		JGI	N/A	IEA
PF04191	PFAM	Phospholipid methyltransferase	JGI	N/A	IEA
PHOSLIPSYN2-PWY	SoyCyc9	superpathway of phospholipid biosynthesis II (plants)	Plant Metabolic Network		ISS
PWY-6825	SoyCyc9	phosphatidylcholine biosynthesis V	Plant Metabolic Network		ISS
PWY4FS-3	SoyCyc9	phosphatidylcholine biosynthesis III	Plant Metabolic Network		ISS
PWY4FS-5	SoyCyc9	superpathway of phosphatidylcholine biosynthesis	Plant Metabolic Network		ISS
GN7V-64775	SoyCyc9-rxn	phosphatidyl-N-methylethanolamine N-methyltransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.07g022900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g022900 not represented in the dataset	Glyma.07g022900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07g022900

Paralog	Evidence	Comments
Glyma.08g218900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g022900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma07g02601	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07g022900

Limit To All Plant Sequences

>Glyma.07g022900.2 sequence-type=transcript locus=Glyma.07g022900 ID=Glyma.07g022900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGAAAAAAACATGACAGTACTGTGCCCCGGTTGGTGAGAAGCAAGAAAAAGGCATATCTGAAGCGAAAAAGAGGACCTGCAGAGTGATGGGATTGCGGCGGCTGTTGGAGTTTTGTCACCGTTTCCGTTCTATTACTGCCTCTGGATTTGGCCACAGTCATGGGTGGACTTGTGTGGCAGAGCCCGAGACCCATCTAAGGTTATGGCTTACGTTGCTCATTTCTTGAAGCTCATCCTGGTTTATCAGCTACTTGGTGAGGCTGGCACATACTACGGTGTACGCTTTGGAAAAACTATTCCCTGGGTAACTGAATTCCCTTTTGGTGTCATCAAAGATCCTCAGTACGTTGGCAGCATTATGAGTCTTCTTGCATGCTTCTTGTGGGTTCCTTTTCAATACATTCTCCTTTGGGTATTAGGATATGTGTTTATGATGCATGTGGAATCAAAGGAAGATCCATCTACTCGTGCCAAACCACTCCATTGATTGAATTTCCGTAGATTAGAAAGAACTTGAGGATTTAGCAGCACCTGAGGTGCCAAATTCTTTGTATGTTGCTGTTTCTTTCCTCTGCTCTGGAATGATCATCTCTATTTATATGTTCTGATTCCAGCAAATTATTTCTAATGAACTGCGAACTTATTTCTGTTTCTCATGACGTGTGTATTTCAAACATGTCAAAGCCATAGCTGATTAATTTAATGAATGCAATGTCTCACCTTTGATAATGATTC

Coding sequences of Glyma.07g022900

Limit To All Plant Sequences

>Glyma.07g022900.1 sequence-type=CDS polypeptide=Glyma.07g022900.1.p locus=Glyma.07g022900 ID=Glyma.07g022900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATTGCGGCGGCTGTTGGAGTTTTGTCACCGTTTCCGTTCTATTACTGCCTCTGGATTTGGCCACAGTCATGGGTGGACTTGTGTGGCAGAGCCCGAGACCCATCTAAGGGTTTATCAGCTACTTGGTGAGGCTGGCACATACTACGGTGTACGCTTTGGAAAAACTATTCCCTGGGTAACTGAATTCCCTTTTGGTGTCATCAAAGATCCTCAGTACGTTGGCAGCATTATGAGTCTTCTTGCATGCTTCTTGTGGGTTCCTTTTCAATACATTCTCCTTTGGGTATTAGGATATGTGTTTATGATGCATGTGGAATCAAAGGAAGATCCATCTACTCGTGCCAAACCACTCCATTGA

>Glyma.07g022900.2 sequence-type=CDS polypeptide=Glyma.07g022900.2.p locus=Glyma.07g022900 ID=Glyma.07g022900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTACGTTGCTCATTTCTTGAAGCTCATCCTGGTTTATCAGCTACTTGGTGAGGCTGGCACATACTACGGTGTACGCTTTGGAAAAACTATTCCCTGGGTAACTGAATTCCCTTTTGGTGTCATCAAAGATCCTCAGTACGTTGGCAGCATTATGAGTCTTCTTGCATGCTTCTTGTGGGTTCCTTTTCAATACATTCTCCTTTGGGTATTAGGATATGTGTTTATGATGCATGTGGAATCAAAGGAAGATCCATCTACTCGTGCCAAACCACTCCATTGA

Predicted protein sequences of Glyma.07g022900

Limit To All Plant Sequences

>Glyma.07g022900.1.p sequence-type=predicted peptide transcript=Glyma.07g022900.1 locus=Glyma.07g022900 ID=Glyma.07g022900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLRRLLEFCHRFRSITASGFGHSHGWTCVAEPETHLRVYQLLGEAGTYYGVRFGKTIPWVTEFPFGVIKDPQYVGSIMSLLACFLWVPFQYILLWVLGYVFMMHVESKEDPSTRAKPLH*

>Glyma.07g022900.2.p sequence-type=predicted peptide transcript=Glyma.07g022900.2 locus=Glyma.07g022900 ID=Glyma.07g022900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYVAHFLKLILVYQLLGEAGTYYGVRFGKTIPWVTEFPFGVIKDPQYVGSIMSLLACFLWVPFQYILLWVLGYVFMMHVESKEDPSTRAKPLH*

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