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Report for Sequence Feature Glyma.07g018600

Feature Type:gene_model
Chromosome:Gm07
Start:1481386
stop:1484350
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g018600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16190.1AT Isochorismatase family protein JGI N/AIEA
GO:0006212GO-bp uracil catabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
KOG4003 KOG Pyrazinamidase/nicotinamidase PNC1 JGI N/AIEA
PTHR11080Panther PYRAZINAMIDASE/NICOTINAMIDASE JGI N/AIEA
PF00857PFAM Isochorismatase family JGI N/AIEA
GN7V-65165SoyCyc9-rxn peroxyureidoacrylate/ureidoacrylate amidohydrolase Plant Metabolic Network ISS

Expression Patterns of Glyma.07g018600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g018600
ParalogEvidenceComments
Glyma.08g203800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g018600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g02130 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07g018600
>Glyma.07g018600.2 sequence-type=transcript locus=Glyma.07g018600 ID=Glyma.07g018600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGAAACAGAAGCAATATATGCAAATGCAAGTGTTTGACTCAGGTAGAAACAGAACAGAAGCATCAATTATCAGTTATCAGCATGGTCAAAACTGTAGTTTGGTCCACTTTTGTGAGACCGCAATATAAACCTGCACATTTCAATCACTCACCCCTTCCATTTCTGAAGCTCAGTACACCCAATTTGAGCTTTCGGTAATTCCCTTTTCTCTCTATTTTTCCTTTTTTCCCCCTATTTATGTGAGGTTCATGTTTCAAGTTCCCGTGCAGTGGGACCAACACAGTACATAATAAGCGATCCAATTGGCCAAAACCTTTGTCACTGCGCTCAAAATCTGTTCTTGCTGTTGCTGGGGCTGACCCTTTGGAAATGGCAGAGGATTGGAACCGCACAGCCCTTCTTGTGATCGACATGCAGAAAGATTTTATAGAAGATGGGGGTCCCATGCTAGTAAAAGGAGGGAAAGACATTGTCCCAAATGTTATTAAGGCTGTCGATGTTGCTAGGCAGCGTGGAATTCTCATAGTTTGGGTAGTACGGGAACATGATCCCTTAGGAAGAGATGTTGAACTCTTTCGTCGGCATCTATATGCAGCAGGGAAAGTTGGTCCAACCTCTAAAGGAAGTGAAGGTGCAGAATTAGTTGATGGACTGGTAATTAAAGAAGGGGATTATAAACTTGTGAAAACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCAGTCCTTCAAGGAGCAGGAATTAATAGTCTTGTGGTCACTGGTGTTCAAACTCCTAACTGTATTAGGCAAACTGTCTATGATGCTGTAGCATTGGACTATCAACCTGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGCCAATGTGTTTGACATGGAAAATATTGGAGTTGCAACCCCAACATTACAAGAATGGAGCGAACCCAAAGCTTGATCTATATGAACTATGAAGCATGCTACTTTTTGCACCCAGTGGTGTACTGGTGTTCAATTCCAAGACTCAAGAAAGGTTTGAAGTGAAGCAAACGTATCTATGTTTACTGCATAATAAAATGATTTACATGGCTAAGTTTGTTTATTTTGGTATTCACTTCACTTTTGTTGTGACTACTATGAACTTATTTTTTCTAGTCCAATGCACTCCAATTTAGAAAAACCCCTAGTTGCTAAACTAAGCTCAAATCTGTTCTTAAAAATTCTGATCATCCATGCAACCCAACTGCATTTTCATTCTTCAAATACGCTCCCAAATGTCTGT
Coding sequences of Glyma.07g018600
>Glyma.07g018600.1 sequence-type=CDS polypeptide=Glyma.07g018600.1.p locus=Glyma.07g018600 ID=Glyma.07g018600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTCAAAACTGTAGTTTGGTCCACTTTTGTGAGACCGCAATATAAACCTGCACATTTCAATCACTCACCCCTTCCATTTCTGAAGCTCAGTACACCCAATTTGAGCTTTCGTGGGACCAACACAGTACATAATAAGCGATCCAATTGGCCAAAACCTTTGTCACTGCGCTCAAAATCTGTTCTTGCTGTTGCTGGGGCTGACCCTTTGGAAATGGCAGAGGATTGGAACCGCACAGCCCTTCTTGTGATCGACATGCAGAAAGATTTTATAGAAGATGGGGGTCCCATGCTAGTAAAAGGAGGGAAAGACATTGTCCCAAATGTTATTAAGGCTGTCGATGTTGCTAGGCAGCGTGGAATTCTCATAGTTTGGGTAGTACGGGAACATGATCCCTTAGGAAGAGATGTTGAACTCTTTCGTCGGCATCTATATGCAGCAGGGAAAGTTGGTCCAACCTCTAAAGGAAGTGAAGGTGCAGAATTAGTTGATGGACTGGTAATTAAAGAAGGGGATTATAAACTTGTGAAAACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCAGTCCTTCAAGGAGCAGGAATTAATAGTCTTGTGGTCACTGGTGTTCAAACTCCTAACTGTATTAGGCAAACTGTCTATGATGCTGTAGCATTGGACTATCAACCTGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGCCAATGTGTTTGACATGGAAAATATTGGAGTTGCAACCCCAACATTACAAGAATGGAGCGAACCCAAAGCTTGA

>Glyma.07g018600.2 sequence-type=CDS polypeptide=Glyma.07g018600.2.p locus=Glyma.07g018600 ID=Glyma.07g018600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGAGGATTGGAACCGCACAGCCCTTCTTGTGATCGACATGCAGAAAGATTTTATAGAAGATGGGGGTCCCATGCTAGTAAAAGGAGGGAAAGACATTGTCCCAAATGTTATTAAGGCTGTCGATGTTGCTAGGCAGCGTGGAATTCTCATAGTTTGGGTAGTACGGGAACATGATCCCTTAGGAAGAGATGTTGAACTCTTTCGTCGGCATCTATATGCAGCAGGGAAAGTTGGTCCAACCTCTAAAGGAAGTGAAGGTGCAGAATTAGTTGATGGACTGGTAATTAAAGAAGGGGATTATAAACTTGTGAAAACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTCAGTCCTTCAAGGAGCAGGAATTAATAGTCTTGTGGTCACTGGTGTTCAAACTCCTAACTGTATTAGGCAAACTGTCTATGATGCTGTAGCATTGGACTATCAACCTGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGCCAATGTGTTTGACATGGAAAATATTGGAGTTGCAACCCCAACATTACAAGAATGGAGCGAACCCAAAGCTTGA
Predicted protein sequences of Glyma.07g018600
>Glyma.07g018600.1.p sequence-type=predicted peptide transcript=Glyma.07g018600.1 locus=Glyma.07g018600 ID=Glyma.07g018600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKTVVWSTFVRPQYKPAHFNHSPLPFLKLSTPNLSFRGTNTVHNKRSNWPKPLSLRSKSVLAVAGADPLEMAEDWNRTALLVIDMQKDFIEDGGPMLVKGGKDIVPNVIKAVDVARQRGILIVWVVREHDPLGRDVELFRRHLYAAGKVGPTSKGSEGAELVDGLVIKEGDYKLVKTRFSAFFATHLHSVLQGAGINSLVVTGVQTPNCIRQTVYDAVALDYQPVTVIVDATAAATPDIHLANVFDMENIGVATPTLQEWSEPKA*

>Glyma.07g018600.2.p sequence-type=predicted peptide transcript=Glyma.07g018600.2 locus=Glyma.07g018600 ID=Glyma.07g018600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEDWNRTALLVIDMQKDFIEDGGPMLVKGGKDIVPNVIKAVDVARQRGILIVWVVREHDPLGRDVELFRRHLYAAGKVGPTSKGSEGAELVDGLVIKEGDYKLVKTRFSAFFATHLHSVLQGAGINSLVVTGVQTPNCIRQTVYDAVALDYQPVTVIVDATAAATPDIHLANVFDMENIGVATPTLQEWSEPKA*






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