Glyma.07g012300

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Report for Sequence Feature Glyma.07g012300

Feature Type:	gene_model
Chromosome:	Gm07
Start:	955051
stop:	964058
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07g012300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51710.1	AT	ubiquitin-specific protease 6	JGI	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	JGI	N/A	IEA
GO:0016579	GO-bp	protein deubiquitination	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0004221	GO-mf	ubiquitin thiolesterase activity	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0036459	GO-mf	thiol-dependent ubiquitinyl hydrolase activity	EnsemblGenomes	N/A	IEA
KOG1872	KOG	Ubiquitin-specific protease	JGI	N/A	IEA
PTHR24006	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24006:SF39	Panther		JGI	N/A	IEA
PF00240	PFAM	Ubiquitin family	JGI	N/A	IEA
PF00443	PFAM	Ubiquitin carboxyl-terminal hydrolase	JGI	N/A	IEA

Expression Patterns of Glyma.07g012300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g012300 not represented in the dataset	Glyma.07g012300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07g012300

Paralog	Evidence	Comments
Glyma.08g195900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g012300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma07g01480	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07g012300

Limit To All Plant Sequences

>Glyma.07g012300.2 sequence-type=transcript locus=Glyma.07g012300 ID=Glyma.07g012300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCTGATATGATTTAGTAGAGAGTCGCGGTCCAACAAAAGAAGAGTCTCGTGGGGTTGGGTTCGTCGGCTGGCGCAGTGAACACGAGAGAGTGGGCCAGACAATCTCCTCTTGCTCTCGCCCCAAATATAAAACCCCAACACACAGAAACAAAGGCCTCAATATATTTTGTTTCGTTTCATTTTGCTCTTTCTTCAAGCCAACCTCTTCCCAACTCTTTGTTCCTTTCTTCCTCTCACTCTCACCATGATTACAGTAAGCGTAAGATGGCAAAAGGAGATTTTCAAAGATGTAGAACTTGACACTACCCAGTCTCCTTATGTTTTTAAATGCCAATTGTATGATTTGACTGGTGTGCCTCCCGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGGATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTAAAGACTCCTGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTGGGCATACTGCTGGTCTTTTCAACTTGGGAAACACATGTTATATGAATTCAACATTGCAATGCCTCCATTCTGTGCCTGAGTTAAAGTCAGCTTTGACTAATTATTCACATTCAGGACGAAACAATGATGTTGATCAATCTTCTCATCTGTTGACCATTGCAACCCGTGACTTGTTCAGCGAGCTTGATAAAAGTGTCAAGCCTGTGGCGCCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAGTGAAAATCCCGATGCTGTGAAGGCCCTCTTTGGCATAGAACTTATTAGCAGGATTCATTGTCAAGAGAGTAAGGAAGAAAGCTCAGAAGCAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGATAAAACATGGGTTAAAATCCGAGTTAGAAAAGGCTTCACTTGTATTGGGCCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAGGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGGAAAGTAGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCTGACGAACTTCGTAAAAAATTGGAAGCTCCTAGACAGATCCTAAGAAATGAAGAAGGCAAAAAGCTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCAGAAGGAAAATGATGTAAAAATGTCTGATGCTGAGGGAGCAACAAGTGGAGGAGGGGAGCCATCTGTAGTTCCCATGGAGGAGGGTGAAAAGGAAACACAGATGACTGGAATTTATGATTTGGTTGCTGTATTAACCCACAAGGGTAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAATTGCTAGGAAGAGCCGATTTGGTGTTTTACTTCAGAGAATCAAGGATTGTGAATGAGAAATGGTTTATTTGTTTTCTACTCCTGAGGTTTGATGCTCATTAGTCGGTATTTATTTCGTTTAGGTATTATATTTTTTTTAAAGGATGCATAAGGATTTGAAATGAAGCATGGTACCCCTGAATCTCCTTCCTTCCATCGACTGGGTCCAAGAGGCACTTGAATATCAAGTTACATACATTTCTGTGGTGAAAGCCTAGCCTATTATTTCTATGAATCAAACGCGAGAGCAACGTCCTTTATGAAATGCTTAGTGAGCATACAATACAGGATGAAAACTTGACATAAACATGTTTAATTTGATTATGATAAGCGAATCCTTTTTTTTATATATATTTTTAAATATTTTATACCC

Coding sequences of Glyma.07g012300

Limit To All Plant Sequences

>Glyma.07g012300.1 sequence-type=CDS polypeptide=Glyma.07g012300.1.p locus=Glyma.07g012300 ID=Glyma.07g012300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTACAGTAAGCGTAAGATGGCAAAAGGAGATTTTCAAAGATGTAGAACTTGACACTACCCAGTCTCCTTATGTTTTTAAATGCCAATTGTATGATTTGACTGGTGTGCCTCCCGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGGATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTAAAGACTCCTGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTGGGCATACTGCTGGTCTTTTCAACTTGGGAAACACATGTTATATGAATTCAACATTGCAATGCCTCCATTCTGTGCCTGAGTTAAAGTCAGCTTTGACTAAAATCAGTTATTCACATTCAGGACGAAACAATGATGTTGATCAATCTTCTCATCTGTTGACCATTGCAACCCGTGACTTGTTCAGCGAGCTTGATAAAAGTGTCAAGCCTGTGGCGCCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAGTGAAAATCCCGATGCTGTGAAGGCCCTCTTTGGCATAGAACTTATTAGCAGGATTCATTGTCAAGAGAGTAAGGAAGAAAGCTCAGAAGCAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGATAAAACATGGGTTAAAATCCGAGTTAGAAAAGGCTTCACTTGTATTGGGCCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAGGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGGAAAGTAGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCTGACGAACTTCGTAAAAAATTGGAAGCTCCTAGACAGATCCTAAGAAATGAAGAAGGCAAAAAGCTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCAGAAGGAAAATGATGTAAAAATGTCTGATGCTGAGGGAGCAACAAGTGGAGGAGGGGAGCCATCTGTAGTTCCCATGGAGGAGGGTGAAAAGGAAACACAGATGACTGGAATTTATGATTTGGTTGCTGTATTAACCCACAAGGGTAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAA

>Glyma.07g012300.2 sequence-type=CDS polypeptide=Glyma.07g012300.2.p locus=Glyma.07g012300 ID=Glyma.07g012300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTACAGTAAGCGTAAGATGGCAAAAGGAGATTTTCAAAGATGTAGAACTTGACACTACCCAGTCTCCTTATGTTTTTAAATGCCAATTGTATGATTTGACTGGTGTGCCTCCCGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGGATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTAAAGACTCCTGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTGGGCATACTGCTGGTCTTTTCAACTTGGGAAACACATGTTATATGAATTCAACATTGCAATGCCTCCATTCTGTGCCTGAGTTAAAGTCAGCTTTGACTAATTATTCACATTCAGGACGAAACAATGATGTTGATCAATCTTCTCATCTGTTGACCATTGCAACCCGTGACTTGTTCAGCGAGCTTGATAAAAGTGTCAAGCCTGTGGCGCCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTTTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAGTGAAAATCCCGATGCTGTGAAGGCCCTCTTTGGCATAGAACTTATTAGCAGGATTCATTGTCAAGAGAGTAAGGAAGAAAGCTCAGAAGCAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGATAAAACATGGGTTAAAATCCGAGTTAGAAAAGGCTTCACTTGTATTGGGCCGTAGTGCTATACACTTGAAGGAATCACGCATTAATGCCCTACCAAGGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGGAAAGTAGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCTGACGAACTTCGTAAAAAATTGGAAGCTCCTAGACAGATCCTAAGAAATGAAGAAGGCAAAAAGCTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCAGAAGGAAAATGATGTAAAAATGTCTGATGCTGAGGGAGCAACAAGTGGAGGAGGGGAGCCATCTGTAGTTCCCATGGAGGAGGGTGAAAAGGAAACACAGATGACTGGAATTTATGATTTGGTTGCTGTATTAACCCACAAGGGTAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCCAAACCAAAACTAGAAGAAGACATCACTAGACTATCTGGAGGAGGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAA

Predicted protein sequences of Glyma.07g012300

Limit To All Plant Sequences

>Glyma.07g012300.1.p sequence-type=predicted peptide transcript=Glyma.07g012300.1 locus=Glyma.07g012300 ID=Glyma.07g012300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MITVSVRWQKEIFKDVELDTTQSPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSTVGVKEGQKLMMMGTADEVVKTPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALTKISYSHSGRNNDVDQSSHLLTIATRDLFSELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSENPDAVKALFGIELISRIHCQESKEESSEAESVYSLKCHISQEVNHLHEGIKHGLKSELEKASLVLGRSAIHLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELRKKLEAPRQILRNEEGKKLGLKVNEKSSVQKENDVKMSDAEGATSGGGEPSVVPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKLEEDITRLSGGGDWHMAYIIMYKARVVSV*

>Glyma.07g012300.2.p sequence-type=predicted peptide transcript=Glyma.07g012300.2 locus=Glyma.07g012300 ID=Glyma.07g012300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MITVSVRWQKEIFKDVELDTTQSPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSTVGVKEGQKLMMMGTADEVVKTPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALTNYSHSGRNNDVDQSSHLLTIATRDLFSELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSENPDAVKALFGIELISRIHCQESKEESSEAESVYSLKCHISQEVNHLHEGIKHGLKSELEKASLVLGRSAIHLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELRKKLEAPRQILRNEEGKKLGLKVNEKSSVQKENDVKMSDAEGATSGGGEPSVVPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKLEEDITRLSGGGDWHMAYIIMYKARVVSV*

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