Report for Sequence Feature Glyma.07g008000
Feature Type: gene_model
Chromosome: Gm07
Start: 585369
stop: 588901
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.07g008000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G08520.1 AT
SNARE-like superfamily protein
JGI N/A IEA
GO:0015031 GO-bp
protein transport
EnsemblGenomes N/A IEA
GO:0016192 GO-bp
vesicle-mediated transport
EnsemblGenomes N/A IEA
GO:0016020 GO-cc
membrane
EnsemblGenomes N/A IEA
KOG3343
KOG
Vesicle coat complex COPI, zeta subunit
JGI N/A IEA
PTHR11043 Panther
ZETA-COAT PROTEIN
JGI N/A IEA
PF01217 PFAM
Clathrin adaptor complex small chain
JGI N/A IEA
Proteins Associated with Glyma.07g008000
Locus Gene Symbol Protein Name
COPZ1 nonclathrin coat protein zeta1-COP
Expression Patterns of Glyma.07g008000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.07g008000
Paralog Evidence Comments
Glyma.08g190800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.07g008000 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma07g01000 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.07g008000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.07g008000.2 sequence-type=transcript locus=Glyma.07g008000 ID=Glyma.07g008000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTATTTACCGAATTGCCCTTCTCCCTTAACAATAAAAATTCATAATTCCTTATTTGCTCCTTCTCATTACAGATCTTCCAAACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACCAAGACTGTTAAGACAAATGCTCGTACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACATTAACTCAAGCCTGGGCTACGGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGATGTTTGCATACACTGAAAATGAGCTACTTATAGTCGAATATCCAATTTTTTGTCTGTTAATGGGAGTTGTTTCATCCCCCATTGCGAGTTATTGTAATGAGCACCATACCATTTTTCTGAAAAGTGTGTTCCGCGTGCATCTTAGCTATTATTTGTCAAATTCGTGGAAGAAGTTATTGATCGAAATATTGTGATATTCAAGTTATGGTTGAGATTTGGTTCCCCAGAATTTACAGTAAATTCTAAATATTTTTTAATCAATATATTTTAAATTTATCATATT
Coding sequences of Glyma.07g008000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.07g008000.1 sequence-type=CDS polypeptide=Glyma.07g008000.1.p locus=Glyma.07g008000 ID=Glyma.07g008000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCTCAAGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACCAAGACTGTTAAGACAAATGCTCGTACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGGTAATGCAACTCTGTTTTGACTTGGTGTGTGTTTGGGAAGCAATTGAACCCAACGCAACATACTTTATGAAAGCTACAGCATAG
>Glyma.07g008000.2 sequence-type=CDS polypeptide=Glyma.07g008000.2.p locus=Glyma.07g008000 ID=Glyma.07g008000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCTCAAGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAACAATGCAAAGTTAGCTTTTGAGAAGTTTGTATTTACCAAGACTGTTAAGACAAATGCTCGTACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTACAAGACCTGCATTTTTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCTCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACATTAACTCAAGCCTGGGCTACGGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA
Predicted protein sequences of Glyma.07g008000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.07g008000.1.p sequence-type=predicted peptide transcript=Glyma.07g008000.1 locus=Glyma.07g008000 ID=Glyma.07g008000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASQGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKFVFTKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQVMQLCFDLVCVWEAIEPNATYFMKATA*
>Glyma.07g008000.2.p sequence-type=predicted peptide transcript=Glyma.07g008000.2 locus=Glyma.07g008000 ID=Glyma.07g008000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASQGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKFVFTKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK*