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Report for Sequence Feature Glyma.07g007000

Feature Type:gene_model
Chromosome:Gm07
Start:509819
stop:514700
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55020.1AT lipoxygenase 1 JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006631GO-bp fatty acid metabolic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0031408GO-bp oxylipin biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016702GO-mf oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen EnsemblGenomesN/AIEA
GO:0016702GO-mf oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
GO:0051213GO-mf dioxygenase activity EnsemblGenomesN/AIEA
PTHR11771Panther LIPOXYGENASE JGI N/AIEA
PTHR11771:SF2Panther JGI N/AIEA
PF00305PFAM Lipoxygenase JGI N/AIEA
PF01477PFAM PLAT/LH2 domain JGI N/AIEA
PWY-5406SoyCyc9 divinyl ether biosynthesis I Plant Metabolic Network ISS
PWY-5407SoyCyc9 9-lipoxygenase and 9-allene oxide synthase pathway Plant Metabolic Network ISS
GN7V-58601SoyCyc9-rxn linoleate 9S-lipoxygenase Plant Metabolic Network ISS

LocusGene SymbolProtein Name
LOX1.4 lipoxygenase 1 gene 4
loxA lipoxygenase A gene
SC514 lipoxygenase

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07g007000 not represented in the dataset

Glyma.07g007000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.08g189500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments


>Glyma.07g007000.2 sequence-type=transcript locus=Glyma.07g007000 ID=Glyma.07g007000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAAACCATATTTTTAAAAAAAACCTAACCCAATGCCACTGTGTATATAAGAACAGAAGAAATCAAAAGAATCAATTTGAATATAATTAAGTATGCATAGAACGTGTTGCATATGGGGGAGGAGGTGCCCATAGAAAAATGAATTAACCGGTGGAGCTCATATTAAAAAAATGATGTTTATACTTTCTCCCTTCTCAAGTCCTCTATAAATACCAAAATATTCTTGGCTTCCTCACACCACAAGCTTCTCCTTCTTTTGGGAAAAGATTAACAATAAAAGTGTGGAGTACTGTTGATAGCAAAGATGTTTGGGATCTTCGACAAGGGGCAAAAGATAAAGGGGACAGTGGTGTTGATGCCAAAGAATGTGTTGGACTTCAACGCCATAACCTCCATCGGTAAAGGTGGTGTTATTGACACAGCCACCGGCATCTTAGGCCAAGGCGTCAGCTTAGTTGGTGGAGTAATTGATACTGCCACTTCCTTCTTAGGCCGTAATATCTCCATGCAATTGATCAGTGCTACTCAGACTGATGGCAGTGGAAATGGGAAAGTTGGAAAAGAAGTCTATTTGGAAAAACATCTTCCGACCTTGCCAACGTTGGGAGCAAGGCAGGATGCGTTCAGTATTTTCTTTGAATGGGATGCTAGTTTTGGAATTCCAGGAGCATTTTACATCAAAAACTTTATGACTGATGAGTTTTTCCTCGTCAGTGTTAAACTCGAGGACATTCCAAACCATGGAACCATTGAATTTGTTTGCAACTCATGGGTTTACAACTTCAGGAGTTACAAAAAGAATCGCATTTTCTTTGTCAATGATACATATCTTCCAAGTGCCACACCAGCTCCACTACTTAAGTACAGAAAAGAAGAATTGGAGGTTTTAAGAGGAGATGGAACAGGGAAGAGAAAGGACTTTGACAGAATCTATGATTATGATGTCTATAATGATTTGGGCAATCCAGATGGTGGTGATCCTCGCCCAATCCTTGGTGGGTCTAGCATCTATCCCTACCCTCGCAGGGTTAGAACAGGAAGAGAAAGGACCAGGACAGATCCCAACAGTGAGAAACCGGGCGAGGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCGGATTTCCTTACATACGGAATCAAATCCTTATCTCACGATGTGATACCTTTGTTCAAATCTGCAATTTTTCAATTAAGGGTCACATCGAGTGAGTTTGAAAGCTTCGAAGATGTGCGTAGTCTCTATGAGGGTGGAATTAAATTGCCAACAGATATACTGAGCCAAATTAGCCCCTTACCAGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATGTTCTTCAATTTCCACCACCTCATGTAGCCAAAGTTAGTAAGTCTGGGTGGATGACTGATGAGGAATTTGCTAGAGAGGTGATTGCCGGTGTAAACCCAAATGTGATCCGTCGTCTTCAAGAATTCCCACCAAAGAGCACACTTGATCCCACACTCTATGGTGATCAAACCAGTACCATAACAAAAGAACAATTGGAGATTAACATGGGAGGGGTCACAGTAGAAGAGGCACTTAGTACTCAGAGATTATTCATATTAGATTACCAAGATGCATTCATCCCATATTTGACGAGGATAAACAGCCTACCTACTGCAAAAGCTTATGCCACAAGGACAATCCTGTTCTTGAAAGATGATGGTACTTTGAAGCCACTTGCTATTGAATTAAGCAAACCACATCCAGATGGAGATAATTTGGGTCCTGAGAGTATAGTGGTGTTGCCTGCAACTGAAGGTGTTGATAGTACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTGAATGACTCTGGTTATCATCAGCTCGTGAGCCATTGGTTAAATACTCATGCAGTGATGGAACCATTTGCCATAGCAACCAATAGGCATCTCAGTGTGCTCCACCCTATTTATAAACTTCTTTATCCTCACTACCGCGACACCATAAATATCAATGGACTTGCTAGGCAGTCCCTgattaatgcagatggcattatagagaaatcatttttgcccggaaagtactccattgagatgtcttcatccgtctacaagaattgggttttcactgaccaagcattaccagctgatctcgtcaagaggtaTTTATTGTAAAAGTCAACCATTGGTCTGAAATATTGTTTTTTCTTAGTAGTACATAGTAGTAATTAAGATACTGTAAAAATCAACCAACTTATCATACATATTAATTTGTGATTAGATGATACTACTATGCTATTTTTACTCTTGAAAGATATTGAGGTTTGGAATGTGTTTTTATTTTTGTTTTGGGGCTTGATTCAGAGGATTGGCAATTGAAGATCCCTCTGCACCCCATGGCCTTCGCCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGACATGGGTTCATGAATATGTCTCCTTGTATTACCCAACAGATGCAGCAGTTCAACAAGATACTGAACTACAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGGTGACTTAAAAGAAAAGCCTTGGTGGCCTAAAATGCAGACAACTGAAGATCTCATTCAATCATGCTCTATTATCGTTTGGACAGCTTCGGCTCTCCATGCTGCTGTTAATTTTGGACAATATCCTTATGGGGGCTTAATCCTGAACCGTCCAACTCTAGCCAGAAGGTTTATCCCAGCTGAAGGAACCCCAGAGTATGATGAGATGGTGAAGAATCCTCAAAAGGCTTATCTGAGAACAATCACACCCAAGTTTGAGACCCTTATTGATCTTTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATATACCTTGGAGAGAGGGAGACTCCAAATTGGACTACTGATAAGAAGGCATTAGAAGCTTTCAAAAGGTTTGGAAGCAAACTGACTGGAATTGAAGGAAAAATCAATGCAAGGAACAGTGATCCAAGTCTGAGAAACCGGACTGGGCCAGTTCAGCTGCCATACACTTTGCTCCATCGTTCAAGTGAGGAAGGGTTGACTTTCAAAGGAATTCCCAACAGTATCTCTATCTAATTAAAAAGAGTTTGTGGTTTCCTTATCTATGTTGTACTTCTGAATAACATAGACTTTATGCATGTCTATGCGTAATTATTGCCTGAACTTCTGCACTATTGTATTTGGATGCTCTCGGTTTTCATATAATAAAGTGTGTTCTCACTTTCACTTTGTATTTAGTTCATCTTATGTTTACCAGTAATAATACAGAAGCGATCGCGTTTATTACTACAATAACAAAC

>Glyma.07g007000.1 sequence-type=CDS polypeptide=Glyma.07g007000.1.p locus=Glyma.07g007000 ID=Glyma.07g007000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGGGATCTTCGACAAGGGGCAAAAGATAAAGGGGACAGTGGTGTTGATGCCAAAGAATGTGTTGGACTTCAACGCCATAACCTCCATCGGTAAAGGTGGTGTTATTGACACAGCCACCGGCATCTTAGGCCAAGGCGTCAGCTTAGTTGGTGGAGTAATTGATACTGCCACTTCCTTCTTAGGCCGTAATATCTCCATGCAATTGATCAGTGCTACTCAGACTGATGGCAGTGGAAATGGGAAAGTTGGAAAAGAAGTCTATTTGGAAAAACATCTTCCGACCTTGCCAACGTTGGGAGCAAGGCAGGATGCGTTCAGTATTTTCTTTGAATGGGATGCTAGTTTTGGAATTCCAGGAGCATTTTACATCAAAAACTTTATGACTGATGAGTTTTTCCTCGTCAGTGTTAAACTCGAGGACATTCCAAACCATGGAACCATTGAATTTGTTTGCAACTCATGGGTTTACAACTTCAGGAGTTACAAAAAGAATCGCATTTTCTTTGTCAATGATACATATCTTCCAAGTGCCACACCAGCTCCACTACTTAAGTACAGAAAAGAAGAATTGGAGGTTTTAAGAGGAGATGGAACAGGGAAGAGAAAGGACTTTGACAGAATCTATGATTATGATGTCTATAATGATTTGGGCAATCCAGATGGTGGTGATCCTCGCCCAATCCTTGGTGGGTCTAGCATCTATCCCTACCCTCGCAGGGTTAGAACAGGAAGAGAAAGGACCAGGACAGATCCCAACAGTGAGAAACCGGGCGAGGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCGGATTTCCTTACATACGGAATCAAATCCTTATCTCACGATGTGATACCTTTGTTCAAATCTGCAATTTTTCAATTAAGGGTCACATCGAGTGAGTTTGAAAGCTTCGAAGATGTGCGTAGTCTCTATGAGGGTGGAATTAAATTGCCAACAGATATACTGAGCCAAATTAGCCCCTTACCAGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATGTTCTTCAATTTCCACCACCTCATGTAGCCAAAGTTAGTAAGTCTGGGTGGATGACTGATGAGGAATTTGCTAGAGAGGTGATTGCCGGTGTAAACCCAAATGTGATCCGTCGTCTTCAAGAATTCCCACCAAAGAGCACACTTGATCCCACACTCTATGGTGATCAAACCAGTACCATAACAAAAGAACAATTGGAGATTAACATGGGAGGGGTCACAGTAGAAGAGGCACTTAGTACTCAGAGATTATTCATATTAGATTACCAAGATGCATTCATCCCATATTTGACGAGGATAAACAGCCTACCTACTGCAAAAGCTTATGCCACAAGGACAATCCTGTTCTTGAAAGATGATGGTACTTTGAAGCCACTTGCTATTGAATTAAGCAAACCACATCCAGATGGAGATAATTTGGGTCCTGAGAGTATAGTGGTGTTGCCTGCAACTGAAGGTGTTGATAGTACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTGAATGACTCTGGTTATCATCAGCTCGTGAGCCATTGGTTAAATACTCATGCAGTGATGGAACCATTTGCCATAGCAACCAATAGGCATCTCAGTGTGCTCCACCCTATTTATAAACTTCTTTATCCTCACTACCGCGACACCATAAATATCAATGGACTTGCTAGGCAGTCCCTGATTAATGCAGATGGCATTATAGAGAAATCATTTTTGCCCGGAAAGTACTCCATTGAGATGTCTTCATCCGTCTACAAGAATTGGGTTTTCACTGACCAAGCATTACCAGCTGATCTCGTCAAGAGAGGATTGGCAATTGAAGATCCCTCTGCACCCCATGGCCTTCGCCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGACATGGGTTCATGAATATGTCTCCTTGTATTACCCAACAGATGCAGCAGTTCAACAAGATACTGAACTACAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGGTGACTTAAAAGAAAAGCCTTGGTGGCCTAAAATGCAGACAACTGAAGATCTCATTCAATCATGCTCTATTATCGTTTGGACAGCTTCGGCTCTCCATGCTGCTGTTAATTTTGGACAATATCCTTATGGGGGCTTAATCCTGAACCGTCCAACTCTAGCCAGAAGGTTTATCCCAGCTGAAGGAACCCCAGAGTATGATGAGATGGTGAAGAATCCTCAAAAGGCTTATCTGAGAACAATCACACCCAAGTTTGAGACCCTTATTGATCTTTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATATACCTTGGAGAGAGGGAGACTCCAAATTGGACTACTGATAAGAAGGCATTAGAAGCTTTCAAAAGGTTTGGAAGCAAACTGACTGGAATTGAAGGAAAAATCAATGCAAGGAACAGTGATCCAAGTCTGAGAAACCGGACTGGGCCAGTTCAGCTGCCATACACTTTGCTCCATCGTTCAAGTGAGGAAGGGTTGACTTTCAAAGGAATTCCCAACAGTATCTCTATCTAA

>Glyma.07g007000.2 sequence-type=CDS polypeptide=Glyma.07g007000.2.p locus=Glyma.07g007000 ID=Glyma.07g007000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGGGATCTTCGACAAGGGGCAAAAGATAAAGGGGACAGTGGTGTTGATGCCAAAGAATGTGTTGGACTTCAACGCCATAACCTCCATCGGTAAAGGTGGTGTTATTGACACAGCCACCGGCATCTTAGGCCAAGGCGTCAGCTTAGTTGGTGGAGTAATTGATACTGCCACTTCCTTCTTAGGCCGTAATATCTCCATGCAATTGATCAGTGCTACTCAGACTGATGGCAGTGGAAATGGGAAAGTTGGAAAAGAAGTCTATTTGGAAAAACATCTTCCGACCTTGCCAACGTTGGGAGCAAGGCAGGATGCGTTCAGTATTTTCTTTGAATGGGATGCTAGTTTTGGAATTCCAGGAGCATTTTACATCAAAAACTTTATGACTGATGAGTTTTTCCTCGTCAGTGTTAAACTCGAGGACATTCCAAACCATGGAACCATTGAATTTGTTTGCAACTCATGGGTTTACAACTTCAGGAGTTACAAAAAGAATCGCATTTTCTTTGTCAATGATACATATCTTCCAAGTGCCACACCAGCTCCACTACTTAAGTACAGAAAAGAAGAATTGGAGGTTTTAAGAGGAGATGGAACAGGGAAGAGAAAGGACTTTGACAGAATCTATGATTATGATGTCTATAATGATTTGGGCAATCCAGATGGTGGTGATCCTCGCCCAATCCTTGGTGGGTCTAGCATCTATCCCTACCCTCGCAGGGTTAGAACAGGAAGAGAAAGGACCAGGACAGATCCCAACAGTGAGAAACCGGGCGAGGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCGGATTTCCTTACATACGGAATCAAATCCTTATCTCACGATGTGATACCTTTGTTCAAATCTGCAATTTTTCAATTAAGGGTCACATCGAGTGAGTTTGAAAGCTTCGAAGATGTGCGTAGTCTCTATGAGGGTGGAATTAAATTGCCAACAGATATACTGAGCCAAATTAGCCCCTTACCAGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATGTTCTTCAATTTCCACCACCTCATGTAGCCAAAGTTAGTAAGTCTGGGTGGATGACTGATGAGGAATTTGCTAGAGAGGTGATTGCCGGTGTAAACCCAAATGTGATCCGTCGTCTTCAAGAATTCCCACCAAAGAGCACACTTGATCCCACACTCTATGGTGATCAAACCAGTACCATAACAAAAGAACAATTGGAGATTAACATGGGAGGGGTCACAGTAGAAGAGGCACTTAGTACTCAGAGATTATTCATATTAGATTACCAAGATGCATTCATCCCATATTTGACGAGGATAAACAGCCTACCTACTGCAAAAGCTTATGCCACAAGGACAATCCTGTTCTTGAAAGATGATGGTACTTTGAAGCCACTTGCTATTGAATTAAGCAAACCACATCCAGATGGAGATAATTTGGGTCCTGAGAGTATAGTGGTGTTGCCTGCAACTGAAGGTGTTGATAGTACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTGAATGACTCTGGTTATCATCAGCTCGTGAGCCATTGGTTAAATACTCATGCAGTGATGGAACCATTTGCCATAGCAACCAATAGGCATCTCAGTGTGCTCCACCCTATTTATAAACTTCTTTATCCTCACTACCGCGACACCATAAATATCAATGGACTTGCTAGGCAGTCCCTGATTAATGCAGATGGCATTATAGAGAAATCATTTTTGCCCGGAAAGTACTCCATTGAGATGTCTTCATCCGTCTACAAGAATTGGGTTTTCACTGACCAAGCATTACCAGCTGATCTCGTCAAGAGGTATTTATTGTAA

>Glyma.07g007000.1.p sequence-type=predicted peptide transcript=Glyma.07g007000.1 locus=Glyma.07g007000 ID=Glyma.07g007000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFGIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDPRPILGGSSIYPYPRRVRTGRERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI*

>Glyma.07g007000.2.p sequence-type=predicted peptide transcript=Glyma.07g007000.2 locus=Glyma.07g007000 ID=Glyma.07g007000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFGIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDPRPILGGSSIYPYPRRVRTGRERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTDQALPADLVKRYLL*







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