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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G55020.1 | AT | lipoxygenase 1 | JGI | N/A | IEA |
GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
GO:0006631 | GO-bp | fatty acid metabolic process | EnsemblGenomes | N/A | IEA |
GO:0006633 | GO-bp | fatty acid biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0031408 | GO-bp | oxylipin biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
GO:0016702 | GO-mf | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | EnsemblGenomes | N/A | IEA |
GO:0016702 | GO-mf | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | JGI | N/A | IEA |
GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
GO:0051213 | GO-mf | dioxygenase activity | EnsemblGenomes | N/A | IEA |
PTHR11771 | Panther | LIPOXYGENASE | JGI | N/A | IEA |
PTHR11771:SF2 | Panther | JGI | N/A | IEA | |
PF00305 | PFAM | Lipoxygenase | JGI | N/A | IEA |
PF01477 | PFAM | PLAT/LH2 domain | JGI | N/A | IEA |
PWY-5406 | SoyCyc9 | divinyl ether biosynthesis I | Plant Metabolic Network | ISS | |
PWY-5407 | SoyCyc9 | 9-lipoxygenase and 9-allene oxide synthase pathway | Plant Metabolic Network | ISS | |
GN7V-58601 | SoyCyc9-rxn | linoleate 9S-lipoxygenase | Plant Metabolic Network | ISS |
Locus | Gene Symbol | Protein Name |
---|---|---|
LOX1.4 | lipoxygenase 1 gene 4 | |
loxA | lipoxygenase A gene | |
SC514 | lipoxygenase |
Glyma.07g007000 not represented in the dataset |
Glyma.07g007000 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.08g189500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
>Glyma.07g007000.2 sequence-type=transcript locus=Glyma.07g007000 ID=Glyma.07g007000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATAAACCATATTTTTAAAAAAAACCTAACCCAATGCCACTGTGTATATAAGAACAGAAGAAATCAAAAGAATCAATTTGAATATAATTAAGTATGCATAGAACGTGTTGCATATGGGGGAGGAGGTGCCCATAGAAAAATGAATTAACCGGTGGAGCTCATATTAAAAAAATGATGTTTATACTTTCTCCCTTCTCAAGTCCTCTATAAATACCAAAATATTCTTGGCTTCCTCACACCACAAGCTTCTCCTTCTTTTGGGAAAAGATTAACAATAAAAGTGTGGAGTACTGTTGATAGCAAAGATGTTTGGGATCTTCGACAAGGGGCAAAAGATAAAGGGGACAGTGGTGTTGATGCCAAAGAATGTGTTGGACTTCAACGCCATAACCTCCATCGGTAAAGGTGGTGTTATTGACACAGCCACCGGCATCTTAGGCCAAGGCGTCAGCTTAGTTGGTGGAGTAATTGATACTGCCACTTCCTTCTTAGGCCGTAATATCTCCATGCAATTGATCAGTGCTACTCAGACTGATGGCAGTGGAAATGGGAAAGTTGGAAAAGAAGTCTATTTGGAAAAACATCTTCCGACCTTGCCAACGTTGGGAGCAAGGCAGGATGCGTTCAGTATTTTCTTTGAATGGGATGCTAGTTTTGGAATTCCAGGAGCATTTTACATCAAAAACTTTATGACTGATGAGTTTTTCCTCGTCAGTGTTAAACTCGAGGACATTCCAAACCATGGAACCATTGAATTTGTTTGCAACTCATGGGTTTACAACTTCAGGAGTTACAAAAAGAATCGCATTTTCTTTGTCAATGATACATATCTTCCAAGTGCCACACCAGCTCCACTACTTAAGTACAGAAAAGAAGAATTGGAGGTTTTAAGAGGAGATGGAACAGGGAAGAGAAAGGACTTTGACAGAATCTATGATTATGATGTCTATAATGATTTGGGCAATCCAGATGGTGGTGATCCTCGCCCAATCCTTGGTGGGTCTAGCATCTATCCCTACCCTCGCAGGGTTAGAACAGGAAGAGAAAGGACCAGGACAGATCCCAACAGTGAGAAACCGGGCGAGGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCGGATTTCCTTACATACGGAATCAAATCCTTATCTCACGATGTGATACCTTTGTTCAAATCTGCAATTTTTCAATTAAGGGTCACATCGAGTGAGTTTGAAAGCTTCGAAGATGTGCGTAGTCTCTATGAGGGTGGAATTAAATTGCCAACAGATATACTGAGCCAAATTAGCCCCTTACCAGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATGTTCTTCAATTTCCACCACCTCATGTAGCCAAAGTTAGTAAGTCTGGGTGGATGACTGATGAGGAATTTGCTAGAGAGGTGATTGCCGGTGTAAACCCAAATGTGATCCGTCGTCTTCAAGAATTCCCACCAAAGAGCACACTTGATCCCACACTCTATGGTGATCAAACCAGTACCATAACAAAAGAACAATTGGAGATTAACATGGGAGGGGTCACAGTAGAAGAGGCACTTAGTACTCAGAGATTATTCATATTAGATTACCAAGATGCATTCATCCCATATTTGACGAGGATAAACAGCCTACCTACTGCAAAAGCTTATGCCACAAGGACAATCCTGTTCTTGAAAGATGATGGTACTTTGAAGCCACTTGCTATTGAATTAAGCAAACCACATCCAGATGGAGATAATTTGGGTCCTGAGAGTATAGTGGTGTTGCCTGCAACTGAAGGTGTTGATAGTACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTGAATGACTCTGGTTATCATCAGCTCGTGAGCCATTGGTTAAATACTCATGCAGTGATGGAACCATTTGCCATAGCAACCAATAGGCATCTCAGTGTGCTCCACCCTATTTATAAACTTCTTTATCCTCACTACCGCGACACCATAAATATCAATGGACTTGCTAGGCAGTCCCTgattaatgcagatggcattatagagaaatcatttttgcccggaaagtactccattgagatgtcttcatccgtctacaagaattgggttttcactgaccaagcattaccagctgatctcgtcaagaggtaTTTATTGTAAAAGTCAACCATTGGTCTGAAATATTGTTTTTTCTTAGTAGTACATAGTAGTAATTAAGATACTGTAAAAATCAACCAACTTATCATACATATTAATTTGTGATTAGATGATACTACTATGCTATTTTTACTCTTGAAAGATATTGAGGTTTGGAATGTGTTTTTATTTTTGTTTTGGGGCTTGATTCAGAGGATTGGCAATTGAAGATCCCTCTGCACCCCATGGCCTTCGCCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGACATGGGTTCATGAATATGTCTCCTTGTATTACCCAACAGATGCAGCAGTTCAACAAGATACTGAACTACAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGGTGACTTAAAAGAAAAGCCTTGGTGGCCTAAAATGCAGACAACTGAAGATCTCATTCAATCATGCTCTATTATCGTTTGGACAGCTTCGGCTCTCCATGCTGCTGTTAATTTTGGACAATATCCTTATGGGGGCTTAATCCTGAACCGTCCAACTCTAGCCAGAAGGTTTATCCCAGCTGAAGGAACCCCAGAGTATGATGAGATGGTGAAGAATCCTCAAAAGGCTTATCTGAGAACAATCACACCCAAGTTTGAGACCCTTATTGATCTTTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATATACCTTGGAGAGAGGGAGACTCCAAATTGGACTACTGATAAGAAGGCATTAGAAGCTTTCAAAAGGTTTGGAAGCAAACTGACTGGAATTGAAGGAAAAATCAATGCAAGGAACAGTGATCCAAGTCTGAGAAACCGGACTGGGCCAGTTCAGCTGCCATACACTTTGCTCCATCGTTCAAGTGAGGAAGGGTTGACTTTCAAAGGAATTCCCAACAGTATCTCTATCTAATTAAAAAGAGTTTGTGGTTTCCTTATCTATGTTGTACTTCTGAATAACATAGACTTTATGCATGTCTATGCGTAATTATTGCCTGAACTTCTGCACTATTGTATTTGGATGCTCTCGGTTTTCATATAATAAAGTGTGTTCTCACTTTCACTTTGTATTTAGTTCATCTTATGTTTACCAGTAATAATACAGAAGCGATCGCGTTTATTACTACAATAACAAAC
>Glyma.07g007000.1 sequence-type=CDS polypeptide=Glyma.07g007000.1.p locus=Glyma.07g007000 ID=Glyma.07g007000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTTGGGATCTTCGACAAGGGGCAAAAGATAAAGGGGACAGTGGTGTTGATGCCAAAGAATGTGTTGGACTTCAACGCCATAACCTCCATCGGTAAAGGTGGTGTTATTGACACAGCCACCGGCATCTTAGGCCAAGGCGTCAGCTTAGTTGGTGGAGTAATTGATACTGCCACTTCCTTCTTAGGCCGTAATATCTCCATGCAATTGATCAGTGCTACTCAGACTGATGGCAGTGGAAATGGGAAAGTTGGAAAAGAAGTCTATTTGGAAAAACATCTTCCGACCTTGCCAACGTTGGGAGCAAGGCAGGATGCGTTCAGTATTTTCTTTGAATGGGATGCTAGTTTTGGAATTCCAGGAGCATTTTACATCAAAAACTTTATGACTGATGAGTTTTTCCTCGTCAGTGTTAAACTCGAGGACATTCCAAACCATGGAACCATTGAATTTGTTTGCAACTCATGGGTTTACAACTTCAGGAGTTACAAAAAGAATCGCATTTTCTTTGTCAATGATACATATCTTCCAAGTGCCACACCAGCTCCACTACTTAAGTACAGAAAAGAAGAATTGGAGGTTTTAAGAGGAGATGGAACAGGGAAGAGAAAGGACTTTGACAGAATCTATGATTATGATGTCTATAATGATTTGGGCAATCCAGATGGTGGTGATCCTCGCCCAATCCTTGGTGGGTCTAGCATCTATCCCTACCCTCGCAGGGTTAGAACAGGAAGAGAAAGGACCAGGACAGATCCCAACAGTGAGAAACCGGGCGAGGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCGGATTTCCTTACATACGGAATCAAATCCTTATCTCACGATGTGATACCTTTGTTCAAATCTGCAATTTTTCAATTAAGGGTCACATCGAGTGAGTTTGAAAGCTTCGAAGATGTGCGTAGTCTCTATGAGGGTGGAATTAAATTGCCAACAGATATACTGAGCCAAATTAGCCCCTTACCAGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATGTTCTTCAATTTCCACCACCTCATGTAGCCAAAGTTAGTAAGTCTGGGTGGATGACTGATGAGGAATTTGCTAGAGAGGTGATTGCCGGTGTAAACCCAAATGTGATCCGTCGTCTTCAAGAATTCCCACCAAAGAGCACACTTGATCCCACACTCTATGGTGATCAAACCAGTACCATAACAAAAGAACAATTGGAGATTAACATGGGAGGGGTCACAGTAGAAGAGGCACTTAGTACTCAGAGATTATTCATATTAGATTACCAAGATGCATTCATCCCATATTTGACGAGGATAAACAGCCTACCTACTGCAAAAGCTTATGCCACAAGGACAATCCTGTTCTTGAAAGATGATGGTACTTTGAAGCCACTTGCTATTGAATTAAGCAAACCACATCCAGATGGAGATAATTTGGGTCCTGAGAGTATAGTGGTGTTGCCTGCAACTGAAGGTGTTGATAGTACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTGAATGACTCTGGTTATCATCAGCTCGTGAGCCATTGGTTAAATACTCATGCAGTGATGGAACCATTTGCCATAGCAACCAATAGGCATCTCAGTGTGCTCCACCCTATTTATAAACTTCTTTATCCTCACTACCGCGACACCATAAATATCAATGGACTTGCTAGGCAGTCCCTGATTAATGCAGATGGCATTATAGAGAAATCATTTTTGCCCGGAAAGTACTCCATTGAGATGTCTTCATCCGTCTACAAGAATTGGGTTTTCACTGACCAAGCATTACCAGCTGATCTCGTCAAGAGAGGATTGGCAATTGAAGATCCCTCTGCACCCCATGGCCTTCGCCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGACATGGGTTCATGAATATGTCTCCTTGTATTACCCAACAGATGCAGCAGTTCAACAAGATACTGAACTACAAGCATGGTGGAAGGAAGCTGTGGAGAAGGGTCATGGTGACTTAAAAGAAAAGCCTTGGTGGCCTAAAATGCAGACAACTGAAGATCTCATTCAATCATGCTCTATTATCGTTTGGACAGCTTCGGCTCTCCATGCTGCTGTTAATTTTGGACAATATCCTTATGGGGGCTTAATCCTGAACCGTCCAACTCTAGCCAGAAGGTTTATCCCAGCTGAAGGAACCCCAGAGTATGATGAGATGGTGAAGAATCCTCAAAAGGCTTATCTGAGAACAATCACACCCAAGTTTGAGACCCTTATTGATCTTTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATATACCTTGGAGAGAGGGAGACTCCAAATTGGACTACTGATAAGAAGGCATTAGAAGCTTTCAAAAGGTTTGGAAGCAAACTGACTGGAATTGAAGGAAAAATCAATGCAAGGAACAGTGATCCAAGTCTGAGAAACCGGACTGGGCCAGTTCAGCTGCCATACACTTTGCTCCATCGTTCAAGTGAGGAAGGGTTGACTTTCAAAGGAATTCCCAACAGTATCTCTATCTAA >Glyma.07g007000.2 sequence-type=CDS polypeptide=Glyma.07g007000.2.p locus=Glyma.07g007000 ID=Glyma.07g007000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTTGGGATCTTCGACAAGGGGCAAAAGATAAAGGGGACAGTGGTGTTGATGCCAAAGAATGTGTTGGACTTCAACGCCATAACCTCCATCGGTAAAGGTGGTGTTATTGACACAGCCACCGGCATCTTAGGCCAAGGCGTCAGCTTAGTTGGTGGAGTAATTGATACTGCCACTTCCTTCTTAGGCCGTAATATCTCCATGCAATTGATCAGTGCTACTCAGACTGATGGCAGTGGAAATGGGAAAGTTGGAAAAGAAGTCTATTTGGAAAAACATCTTCCGACCTTGCCAACGTTGGGAGCAAGGCAGGATGCGTTCAGTATTTTCTTTGAATGGGATGCTAGTTTTGGAATTCCAGGAGCATTTTACATCAAAAACTTTATGACTGATGAGTTTTTCCTCGTCAGTGTTAAACTCGAGGACATTCCAAACCATGGAACCATTGAATTTGTTTGCAACTCATGGGTTTACAACTTCAGGAGTTACAAAAAGAATCGCATTTTCTTTGTCAATGATACATATCTTCCAAGTGCCACACCAGCTCCACTACTTAAGTACAGAAAAGAAGAATTGGAGGTTTTAAGAGGAGATGGAACAGGGAAGAGAAAGGACTTTGACAGAATCTATGATTATGATGTCTATAATGATTTGGGCAATCCAGATGGTGGTGATCCTCGCCCAATCCTTGGTGGGTCTAGCATCTATCCCTACCCTCGCAGGGTTAGAACAGGAAGAGAAAGGACCAGGACAGATCCCAACAGTGAGAAACCGGGCGAGGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCGGATTTCCTTACATACGGAATCAAATCCTTATCTCACGATGTGATACCTTTGTTCAAATCTGCAATTTTTCAATTAAGGGTCACATCGAGTGAGTTTGAAAGCTTCGAAGATGTGCGTAGTCTCTATGAGGGTGGAATTAAATTGCCAACAGATATACTGAGCCAAATTAGCCCCTTACCAGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATGTTCTTCAATTTCCACCACCTCATGTAGCCAAAGTTAGTAAGTCTGGGTGGATGACTGATGAGGAATTTGCTAGAGAGGTGATTGCCGGTGTAAACCCAAATGTGATCCGTCGTCTTCAAGAATTCCCACCAAAGAGCACACTTGATCCCACACTCTATGGTGATCAAACCAGTACCATAACAAAAGAACAATTGGAGATTAACATGGGAGGGGTCACAGTAGAAGAGGCACTTAGTACTCAGAGATTATTCATATTAGATTACCAAGATGCATTCATCCCATATTTGACGAGGATAAACAGCCTACCTACTGCAAAAGCTTATGCCACAAGGACAATCCTGTTCTTGAAAGATGATGGTACTTTGAAGCCACTTGCTATTGAATTAAGCAAACCACATCCAGATGGAGATAATTTGGGTCCTGAGAGTATAGTGGTGTTGCCTGCAACTGAAGGTGTTGATAGTACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTGAATGACTCTGGTTATCATCAGCTCGTGAGCCATTGGTTAAATACTCATGCAGTGATGGAACCATTTGCCATAGCAACCAATAGGCATCTCAGTGTGCTCCACCCTATTTATAAACTTCTTTATCCTCACTACCGCGACACCATAAATATCAATGGACTTGCTAGGCAGTCCCTGATTAATGCAGATGGCATTATAGAGAAATCATTTTTGCCCGGAAAGTACTCCATTGAGATGTCTTCATCCGTCTACAAGAATTGGGTTTTCACTGACCAAGCATTACCAGCTGATCTCGTCAAGAGGTATTTATTGTAA
>Glyma.07g007000.1.p sequence-type=predicted peptide transcript=Glyma.07g007000.1 locus=Glyma.07g007000 ID=Glyma.07g007000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFGIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDPRPILGGSSIYPYPRRVRTGRERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI* >Glyma.07g007000.2.p sequence-type=predicted peptide transcript=Glyma.07g007000.2 locus=Glyma.07g007000 ID=Glyma.07g007000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFGIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDPRPILGGSSIYPYPRRVRTGRERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTDQALPADLVKRYLL*
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