SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.07g002800

Feature Type:gene_model
Chromosome:Gm07
Start:219508
stop:226024
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.07g002800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79650.1AT RAD23,RAD23B JGI N/AIEA
GO:0006289GO-bp nucleotide-excision repair JGI N/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process JGI N/AIEA
GO:0003684GO-mf damaged DNA binding JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
K10839KEGG DNA repair and recombination proteins JGI N/AIEA
KOG0011 KOG Nucleotide excision repair factor NEF2, RAD23 component JGI N/AIEA
PTHR10621PantherFam UV EXCISION REPAIR PROTEIN RAD23 JGI N/AIEA
PF00240Pfam Ubiquitin family JGI N/AIEA
PF00627Pfam UBA/TS-N domain JGI N/AIEA
PF09280Pfam XPC-binding domain JGI N/AIEA

Gene model name correspondences to Glyma.07g002800 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g00490 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g002800
>Glyma.07g002800.1 sequence-type=CDS polypeptide=Glyma.07g002800.1.p locus=Glyma.07g002800 id=Glyma.07g002800.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAACAAAGTCTCTGAAGATGGTTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTATTTGTATTCTGGAATCCCTGAAGCAGCCGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGTATGTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTAGTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAGGTGATATGTTTGAGCAGCCTGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAAGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA

>Glyma.07g002800.3 sequence-type=CDS polypeptide=Glyma.07g002800.3.p locus=Glyma.07g002800 id=Glyma.07g002800.3.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGAGTAAAACATCGGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCAGCAATCCTGCTACGACTGTATCAATGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTCTGCAGATACCTATGGTCTGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTATTTGTATTCTGGAATCCCTGAAGCAGCCGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGTATGTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTAGTACTGGTGCTGGACTTGGATCGCTGGACTTCCTTAGAAATAACCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAGGTGATATGTTTGAGCAGCCTGAGCAAGACATGCCCCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAAGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA
Predicted protein sequences of Glyma.07g002800
>Glyma.07g002800.1.p sequence-type=predicted peptide transcript=Glyma.07g002800.1 locus=Glyma.07g002800 id=Glyma.07g002800.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*

>Glyma.07g002800.3.p sequence-type=predicted peptide transcript=Glyma.07g002800.3 locus=Glyma.07g002800 id=Glyma.07g002800.3.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSKTSGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo