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Report for Sequence Feature Glyma.07g001300

Feature Type:gene_model
Chromosome:Gm07
Start:132866
stop:141435
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07g001300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78950.1AT Terpenoid cyclases family protein JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
GO:0016866GO-mf intramolecular transferase activity EnsemblGenomesN/AIEA
KOG0497 KOG Oxidosqualene-lanosterol cyclase and related proteins JGI N/AIEA
PTHR11764Panther LANOSTEROL SYNTHASE JGI N/AIEA
PTHR11764:SF3Panther JGI N/AIEA
PF00432PFAM Prenyltransferase and squalene oxidase repeat JGI N/AIEA
PWY-5203SoyCyc9 soybean saponin I biosynthesis Plant Metabolic Network ISS
PWY-6115SoyCyc9 avenacin biosynthesis, initial reactions Plant Metabolic Network ISS
GN7V-51517SoyCyc9-rxn β-amyrin synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.07g001300
LocusGene SymbolProtein Name
AMS1 beta-amyrin synthase

Expression Patterns of Glyma.07g001300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07g001300
ParalogEvidenceComments
Glyma.08g225800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07g001300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma07g00330 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.07g001300
>Glyma.07g001300.1 sequence-type=CDS polypeptide=Glyma.07g001300.1.p locus=Glyma.07g001300 ID=Glyma.07g001300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAGGCTGAAGATAGCAGATGGAGGAAATGATCCATACATATTCAGCACAAACAATTTCGTTGGGAGGCAGACATGGGAGTTTGATCCTGAAGCAGGCAGTCCAGAGGAACGGGCCCAGGTTGAAGCAGCTCGTCAGCATTTCTACCACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAAGATGGAGAGGAAATCACATACCAAAAAGTCACAAGCGCCGTCAGAAGGGGCGCACACCACCTTGCGGCACTGCAGACCTCTGATGGCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAACATCGCAAAGAAATTCTTCGTTACACATATTATCACCAGAATGAAGACGGAGGATGGGGACTACACATAGAGGGTCATAGCACTATGTTTTGTACTGCACTGAACTATATATGCATGCGAATGCTTGGAGAAGGACCTAATGGAGGTCATGACAATGCTTGTGCTAGAGCAAGAAAGTGGATTCGAGATCATGGTGGTGTAACACATATACCTTCATGGGGAAAAACTTGGCTTTCGATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGCTAAGATGTGGTGTTACTGTCGATTGGTATACATGCCTATGTCTTACTTATATGGGAAGAGGTTTGTGGGTCCAATCACACCACTCATCTTACAATTAAGAGAAGAGTTGTTTACTCAACCTTATGAAAAAGTTAATTGGAAGAAAGCGCGTCACCAATGTGCAAAGGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGTTGATTAGAGAAAAGGCCCTTCAAGTAACTATGAAACATATTCATTATGAAGATGAGACTAGTCGATACATAACCATTGGTTGTGTGGAAAAGGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATGGAATGACCATGCAGAGTTTTGGTAGCCAAGAATGGGATGCTGGCTTTGCTGTTCAAGCTTTGCTTGCCACTAACATAATTGAAGAAATTGGTCCTACGTTTGCAAAAGGACATGATTTCATCAAGAAGTCTCAGGTGAAGGATAATCCTTTTGGAGATTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGATTATACGATTCAGTCAATGTCTTGTTGTCGCTTCAGAGTAAAAAAGGTGGTTTAGCAGCATGGGAGCCTGCAGGAGCTCAAGAGTGGTTAGAATTACTCAATCCCACAGAATTTTTTGCGGACATTGTAGTTGAACATGAATATGTTGAGTGCACTGGATCTGCAATCCAAGCTTTAGTTTTGTTCAAGAAGCTATATCCAGGACATAGGAAGAAAGAGATAGAAAATTTCATTACCAATGCAGTTCGATTCCTTGAAGATACACAAACAGCTGATGGTTCATGGTATGGAAATTGGGGAGTTTGCTTCACTTATGGCTCTTGGTTTGCACTTGGAGGTCTAGCAGCTGCTGGTAAGACTTACACCAATTGTGCTGCCATTCGCAAAGCCGTTAAATTTCTACTTACAACACAAAGAGAGGACGGTGGATGGGGAGAGAGTTATCTTTCAAGCCCAAAAAAGATATATGTACCTCTAGAAGGAAGCCGATCAAATGTTGTACATACAGCATGGGCTCTTATGGGACTAATTCATGCTGGACAGGCGGATAGAGACCCCATGCCTCTTCACCGTGCTGCAAAGTTGCTCATTAATTCTCAGTTGGAAGAGGGTGATTGGCCCCAACAGGAAATCACGGGAGTATTCATGAAAAATTGCATGTTGCATTATCCAATGTACAGAGATATTTATCCAATGTGGGCTCTAGCTGAATATCGAAGGCGGGTTCCATTGCCTTCCACTGAAGTTTAA
Predicted protein sequences of Glyma.07g001300
>Glyma.07g001300.1.p sequence-type=predicted peptide transcript=Glyma.07g001300.1 locus=Glyma.07g001300 ID=Glyma.07g001300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRLKIADGGNDPYIFSTNNFVGRQTWEFDPEAGSPEERAQVEAARQHFYHNRFKVKPCADLLWRFQVLRENNFKQTIPRVTIEDGEEITYQKVTSAVRRGAHHLAALQTSDGHWPAQIAGPLFFLPPLVFCMYITGNLESVFPEEHRKEILRYTYYHQNEDGGWGLHIEGHSTMFCTALNYICMRMLGEGPNGGHDNACARARKWIRDHGGVTHIPSWGKTWLSILGVFDWCGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTQPYEKVNWKKARHQCAKEDLYYPHPLIQDLIWDSLYIFTEPLLTRWPFNKLIREKALQVTMKHIHYEDETSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARVPDYLWVSEDGMTMQSFGSQEWDAGFAVQALLATNIIEEIGPTFAKGHDFIKKSQVKDNPFGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLLSLQSKKGGLAAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFITNAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYTNCAAIRKAVKFLLTTQREDGGWGESYLSSPKKIYVPLEGSRSNVVHTAWALMGLIHAGQADRDPMPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVPLPSTEV*






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