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Report for Sequence Feature Glyma.07G259200

Feature Type:gene_model
Chromosome:Gm07
Start:43481726
stop:43484609
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07G259200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04870.1AT cardiolipin synthase JGI N/AIEA
GO:0008654GO-bp phospholipid biosynthetic process EnsemblGenomesN/AIEA
GO:0008654GO-bp phospholipid biosynthetic process JGI N/AIEA
GO:0032049GO-bp cardiolipin biosynthetic process EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0008808GO-mf cardiolipin synthase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016780GO-mf phosphotransferase activity, for other substituted phosphate groups EnsemblGenomesN/AIEA
GO:0016780GO-mf phosphotransferase activity, for other substituted phosphate groups JGI N/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
KOG1617 KOG CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase JGI N/AIEA
PTHR14269Panther CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED JGI N/AIEA
PTHR14269:SF3Panther JGI N/AIEA
PF01066PFAM CDP-alcohol phosphatidyltransferase JGI N/AIEA
PWY-5269SoyCyc9 cardiolipin biosynthesis II Plant Metabolic Network ISS
GN7V-48783SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.07G259200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07G259200 not represented in the dataset
Glyma.07G259200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.07G259200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g259200 Wm82.a4.v1ISS As supplied by JGI
Glyma07g38910 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07G259200
>Glyma.07g259200.2 sequence-type=transcript locus=Glyma.07g259200 ID=Glyma.07g259200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCGAATGAAATTCAACGGCGAAGAAAGTGTGAGGTCAGGTCGAACAGCAAGACGAGGAAAACGCACGTAGCGTCACCGCCATCTTCCATCTAAAACCCCAAAACTTAACATGCCCAATCTGTGTCGAAAAATGTTTCAATAATGGTTCTGTTCCGCAAGTTCCTAAAACAAATACTCGTCGACAACACCCAAACCAAAACAAAAGCCCGAACCTTTTTCACCTCAACCTCAACCGCAACCGCATTCCCATGGTGCGCGCCTCACCATAACAACCGCCTCTTCCGGTCcccaggcccaggcccaggcccaggcccTCTCTTCCTCGCTCGGCCTCCATGGAAACTCTCTCAGTCCGCCACCCCTCTCTATTCGCACGGAAACGCCTTCAATTTGCTTCGCTCCACAGCCCCTCTCCAGTTCCCTGATCCGGTTCCCTCCCATTCCAACAAACCCTCGATTTTCCACAGCTTCGTCAATCTCCCCAACTTCATTTCCTTCACCCGATTACTTTCCGGTCCTCTCCTCGCATGGATGATCTCCAACGAGTTTTATACTTCTGCAATGGTAGGGCTGGCTCTCTCCGGTGCCACCGATTGGCTGGATGGATACGTGGCTAGGAAGATGAAGATCGATTCCGTAGTGGGTTCCTACCTTGATCCCCTTGCTGACAAGGTCCTTATTGGTTGCGTTGCTCTTGCTATGGTGCATAGAGATCTACTGCATCCTGGACTTGTTAGTCTTGTTGTGTTCCGGGACGTCTTCCTCGTTGGTGGCGCAGTATTTCTAAGAGCAAATAGCTTGGGTTGGAAGTGGGAAAGCTGGTTTGATTTTTTTAACCTTGATGGGACCTGCCGCCAAAAGGTTGAACCACTCTTTCTAAGCAAGGTGAATACAGTGTTCCAATTAGCACTAGTTGCTGCAGCTCTTCTTCAACCAGAGTTTGGAACCCAGGAAACTCAATTATATGTTACTTATTTGAGGTAATCTTGCGTGAATTTTTTATTTCCCTTCTAGCAAGTCTTCCCAGATGTGAACTTGAACCATTTTCTGCTGCAGCTATTTAGTGGCTTCAACAACTGTAGCATCTACTGCAGCATATGGAGCACAATATTTTAGGAGACTGGCTGTAGTATCAAACTCGGTCTAGTTAAGTTTCCATTGAGATGCAGAGGGATCAGGGATCGGCATGAGCAAGGACTTATTGCACAGTAAATTATGGCTAGATTGCACAGTCTTTGTTTTCAAACTTTGCCTTCTAACATAAGCATTAATGTTTCAAATGTTTTCAAGTAGTGGCTGACAAATGTTAGATTATTTTTCCTGCAATTCTATGTTAGAGGAACGTATGAAACGTGTCTTTCTCTTTCATGCCATTTGAATTTATTTGATCAAGTCACACAACCCAAATTATAACCTGAACATAAATTGCTACAGCGCTACCTATTCTA
Coding sequences of Glyma.07G259200
>Glyma.07g259200.1 sequence-type=CDS polypeptide=Glyma.07g259200.1.p locus=Glyma.07g259200 ID=Glyma.07g259200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCTGTTCCGCAAGTTCCTAAAACAAATACTCGTCGACAACACCCAAACCAAAACAAAAGCCCGAACCTTTTTCACCTCAACCTCAACCGCAACCGCATTCCCATGGTGCGCGCCTCACCATAACAACCGCCTCTTCCGGTCCCCAGGCCCAGGCCCAGGCCCAGGCCCTCTCTTCCTCGCTCGGCCTCCATGGAAACTCTCTCAGTCCGCCACCCCTCTCTATTCGCACGGAAACGCCTTCAATTTGCTTCGCTCCACAGCCCCTCTCCAGTTCCCTGATCCGGTTCCCTCCCATTCCAACAAACCCTCGATTTTCCACAGCTTCGTCAATCTCCCCAACTTCATTTCCTTCACCCGATTACTTTCCGGTCCTCTCCTCGCATGGATGATCTCCAACGAGTTTTATACTTCTGCAATGGTAGGGCTGGCTCTCTCCGGTGCCACCGATTGGCTGGATGGATACGTGGCTAGGAAGATGAAGATCGATTCCGTAGTGGGTTCCTACCTTGATCCCCTTGCTGACAAGGTCCTTATTGGTTGCGTTGCTCTTGCTATGGTGCATAGAGATCTACTGCATCCTGGACTTGTTAGTCTTGTTGTGTTCCGGGACGTCTTCCTCGTTGGTGGCGCAGTATTTCTAAGAGCAAATAGCTTGGGTTGGAAGTGGGAAAGCTGGTTTGATTTTTTTAACCTTGATGGGACCTGCCGCCAAAAGGTTGAACCACTCTTTCTAAGCAAGGTGAATACAGTGTTCCAATTAGCACTAGTTGCTGCAGCTCTTCTTCAACCAGAGTTTGGAACCCAGGAAACTCAATTATATGTTACTTATTTGAGCTATTTAGTGGCTTCAACAACTGTAGCATCTACTGCAGCATATGGAGCACAATATTTTAGGAGACTGGCTGTAGTATCAAACTCGGTCTAG

>Glyma.07g259200.2 sequence-type=CDS polypeptide=Glyma.07g259200.2.p locus=Glyma.07g259200 ID=Glyma.07g259200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCTGTTCCGCAAGTTCCTAAAACAAATACTCGTCGACAACACCCAAACCAAAACAAAAGCCCGAACCTTTTTCACCTCAACCTCAACCGCAACCGCATTCCCATGGTGCGCGCCTCACCATAACAACCGCCTCTTCCGGTCCCCAGGCCCAGGCCCAGGCCCAGGCCCTCTCTTCCTCGCTCGGCCTCCATGGAAACTCTCTCAGTCCGCCACCCCTCTCTATTCGCACGGAAACGCCTTCAATTTGCTTCGCTCCACAGCCCCTCTCCAGTTCCCTGATCCGGTTCCCTCCCATTCCAACAAACCCTCGATTTTCCACAGCTTCGTCAATCTCCCCAACTTCATTTCCTTCACCCGATTACTTTCCGGTCCTCTCCTCGCATGGATGATCTCCAACGAGTTTTATACTTCTGCAATGGTAGGGCTGGCTCTCTCCGGTGCCACCGATTGGCTGGATGGATACGTGGCTAGGAAGATGAAGATCGATTCCGTAGTGGGTTCCTACCTTGATCCCCTTGCTGACAAGGTCCTTATTGGTTGCGTTGCTCTTGCTATGGTGCATAGAGATCTACTGCATCCTGGACTTGTTAGTCTTGTTGTGTTCCGGGACGTCTTCCTCGTTGGTGGCGCAGTATTTCTAAGAGCAAATAGCTTGGGTTGGAAGTGGGAAAGCTGGTTTGATTTTTTTAACCTTGATGGGACCTGCCGCCAAAAGGTTGAACCACTCTTTCTAAGCAAGGTGAATACAGTGTTCCAATTAGCACTAGTTGCTGCAGCTCTTCTTCAACCAGAGTTTGGAACCCAGGAAACTCAATTATATGTTACTTATTTGAGGTAA
Predicted protein sequences of Glyma.07G259200
>Glyma.07g259200.1.p sequence-type=predicted peptide transcript=Glyma.07g259200.1 locus=Glyma.07g259200 ID=Glyma.07g259200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLFRKFLKQILVDNTQTKTKARTFFTSTSTATAFPWCAPHHNNRLFRSPGPGPGPGPLFLARPPWKLSQSATPLYSHGNAFNLLRSTAPLQFPDPVPSHSNKPSIFHSFVNLPNFISFTRLLSGPLLAWMISNEFYTSAMVGLALSGATDWLDGYVARKMKIDSVVGSYLDPLADKVLIGCVALAMVHRDLLHPGLVSLVVFRDVFLVGGAVFLRANSLGWKWESWFDFFNLDGTCRQKVEPLFLSKVNTVFQLALVAAALLQPEFGTQETQLYVTYLSYLVASTTVASTAAYGAQYFRRLAVVSNSV*

>Glyma.07g259200.2.p sequence-type=predicted peptide transcript=Glyma.07g259200.2 locus=Glyma.07g259200 ID=Glyma.07g259200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLFRKFLKQILVDNTQTKTKARTFFTSTSTATAFPWCAPHHNNRLFRSPGPGPGPGPLFLARPPWKLSQSATPLYSHGNAFNLLRSTAPLQFPDPVPSHSNKPSIFHSFVNLPNFISFTRLLSGPLLAWMISNEFYTSAMVGLALSGATDWLDGYVARKMKIDSVVGSYLDPLADKVLIGCVALAMVHRDLLHPGLVSLVVFRDVFLVGGAVFLRANSLGWKWESWFDFFNLDGTCRQKVEPLFLSKVNTVFQLALVAAALLQPEFGTQETQLYVTYLR*






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