Glyma.07G196000

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Report for Sequence Feature Glyma.07G196000

Feature Type:	gene_model
Chromosome:	Gm07
Start:	36452344
stop:	36455168
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07G196000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03510.1	AT	RING membrane-anchor 1	JGI	N/A	IEA
GO:0030433	GO-bp	ubiquitin-dependent ERAD pathway	EnsemblGenomes	N/A	IEA
GO:0071712	GO-bp	ER-associated misfolded protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0036513	GO-cc	Derlin-1 retrotranslocation complex	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0044390	GO-mf	ubiquitin-like protein conjugating enzyme binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG0823	KOG	Predicted E3 ubiquitin ligase	JGI	N/A	IEA
PTHR12313	Panther	RNF5	JGI	N/A	IEA
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI	N/A	IEA

Expression Patterns of Glyma.07G196000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07G196000 not represented in the dataset	Glyma.07G196000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07G196000

Paralog	Evidence	Comments
Glyma.13g179900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07G196000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g196000	Wm82.a4.v1	ISS	As supplied by JGI
Glyma07g31580	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07G196000

Limit To All Plant Sequences

>Glyma.07g196000.2 sequence-type=transcript locus=Glyma.07g196000 ID=Glyma.07g196000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTTGTTTTCGTGTGACTGGGGTAAAAAATAAAAACTATATAAACAACGCGCTGCATCAATTCCCTCCGCTCTGATAATAAAGCCACTCGCCGCTCTCTGCACCCTCCTCTCTCTCTCTTTGGTGCTGGACAAGGACAAGTAACCAAAATTCCAAGAAGGGTTCATTAATACATGGCCTTAGAGCACTACCTTTCGCAGGAATGGAAAACCAGCCCCAGCCCGAGCCCGAGCCCCATGACAGTGACAGAAAACCTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCGTGATGGAAAGGCATCATCCTATAGAGGCAGTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCTCTCATGTCAACATCATCTCAAAGTGCTCAACAACTTCCATATCGCAACCCTTATCAGAATCAGCATTTCAACCCTCCTTTGTACCAAGATGAGGATGAATCATCATCACAAATGCTGAATCCTGGTGCCAACATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGCTTTATGCCAGAGTCTTTGGCAACTCAGAAAATTTATACAACTATCCAAATTCTTATCACCTGGGGGGAAGTAATAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATCTCAATTTTTCTGTTTTGTTGCTTCCTTCTGTGTCTTATTGTCTTCTAAGCAAGTAATTGGATTGTTATTATCTATTGTCCCATTGTATAATTTGTAAAGAAACACGGGTGTAAGCTCTGAGAACGAGATAGATTGAGCAATGTTAGGGTAAAATAACTGGTGTTCTTCAACATTTACTGCAATATATCAGAGCTCATTTTTCAGATTGTCACTCTATATGACTATCGAAGATGTTGCATTGTACTGCACCCTATTCTATGCC

Coding sequences of Glyma.07G196000

Limit To All Plant Sequences

>Glyma.07g196000.1 sequence-type=CDS polypeptide=Glyma.07g196000.1.p locus=Glyma.07g196000 ID=Glyma.07g196000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTTAGAGCACTACCTTTCGCAGGAATGGAAAACCAGCCCCAGCCCGAGCCCGAGCCCCATGACAGTGACAGAAAACCTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCGTGATGGAAAGGCATCATCCTATAGAGGCAGTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCTCTCATGTCAACATCATCTCAAAGTGCTCAACAACTTCCATATCGCAACCCTTATCAGAATCAGCATTTCAACCCTCCTTTGTACCAAGATGAGGATGAATCATCATCACAAATGCTGAATCCTGGTGCCAACATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGCTTTATGCCAGAGTCTTTGGCAACTCAGAAAATTTATACAACTATCCAAATTCTTATCACCTGGGGGGAAGTAATAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATCTCAATTTTTCTGTTTTGTTGCTTCCTTCTGTGTCTTATTGTCTTCTAA

>Glyma.07g196000.2 sequence-type=CDS polypeptide=Glyma.07g196000.2.p locus=Glyma.07g196000 ID=Glyma.07g196000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTTAGAGCACTACCTTTCGCAGGAATGGAAAACCAGCCCCAGCCCGAGCCCGAGCCCCATGACAGTGACAGAAAACCTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCGTGATGGAAAGGCATCATCCTATAGAGGCAGTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCTCTCATGTCAACATCATCTCAAAGTGCTCAACAACTTCCATATCGCAACCCTTATCAGAATCAGCATTTCAACCCTCCTTTGTACCAAGATGAGGATGAATCATCATCACAAATGCTGAATCCTGGTGCCAACATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGCTTTATGCCAGAGTCTTTGGCAACTCAGAAAATTTATACAACTATCCAAATTCTTATCACCTGGGGGGAAGTAATAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATCTCAATTTTTCTGTTTTGTTGCTTCCTTCTGTGTCTTATTGTCTTCTAA

Predicted protein sequences of Glyma.07G196000

Limit To All Plant Sequences

>Glyma.07g196000.1.p sequence-type=predicted peptide transcript=Glyma.07g196000.1 locus=Glyma.07g196000 ID=Glyma.07g196000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALEHYLSQEWKTSPSPSPSPMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQGIAHSDRDGKASSYRGSFIPPRPPALGAQSLMSTSSQSAQQLPYRNPYQNQHFNPPLYQDEDESSSQMLNPGANMVAPGFPHLVVGMFGEMLYARVFGNSENLYNYPNSYHLGGSNNNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF*

>Glyma.07g196000.2.p sequence-type=predicted peptide transcript=Glyma.07g196000.2 locus=Glyma.07g196000 ID=Glyma.07g196000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALEHYLSQEWKTSPSPSPSPMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQGIAHSDRDGKASSYRGSFIPPRPPALGAQSLMSTSSQSAQQLPYRNPYQNQHFNPPLYQDEDESSSQMLNPGANMVAPGFPHLVVGMFGEMLYARVFGNSENLYNYPNSYHLGGSNNNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF*

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