Glyma.07G112100

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Report for Sequence Feature Glyma.07G112100

Feature Type:	gene_model
Chromosome:	Gm07
Start:	11582562
stop:	11591083
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.07G112100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G60400.1	AT	Mitochondrial transcription termination factor family protein	JGI	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0008380	GO-bp	RNA splicing	EnsemblGenomes	N/A	IEA
GO:0009658	GO-bp	chloroplast organization	EnsemblGenomes	N/A	IEA
GO:0032502	GO-bp	developmental process	EnsemblGenomes	N/A	IEA
GO:0042255	GO-bp	ribosome assembly	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0003690	GO-mf	double-stranded DNA binding	EnsemblGenomes	N/A	IEA
GO:0003727	GO-mf	single-stranded RNA binding	EnsemblGenomes	N/A	IEA
GO:0019843	GO-mf	rRNA binding	EnsemblGenomes	N/A	IEA
PTHR13068	Panther	CGI-12 PROTEIN-RELATED	JGI	N/A	IEA
PTHR13068:SF3	Panther	MTERF DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL	JGI	N/A	IEA
PF02536	PFAM	mTERF	JGI	N/A	IEA

Expression Patterns of Glyma.07G112100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07G112100 not represented in the dataset	Glyma.07G112100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.07G112100

Paralog	Evidence	Comments
Glyma.03g114500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07G112100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g112100	Wm82.a4.v1	ISS	As supplied by JGI
Glyma07g14330	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.07G112100

Limit To All Plant Sequences

>Glyma.07g112100.2 sequence-type=transcript locus=Glyma.07g112100 ID=Glyma.07g112100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
atgcaaatcaaattaaacaagaggaaacagcagttgaagaggagaaaagcaaacaaagcaaagcaaaAACCCTGGCTTCAGTTCAGAGCaaaaaaaaaaaaaaaaaaCATGTCCCTCCACCGCCATGTTTGCACAACCACCTCAAAGCTCTcagcagcagcagcagcagcGATCCCTTGGAAGTACAAGAAGTTCGCGATAGCACAGGGCCAGAAGTCCCTCACTGACTACCTCCACGCTACTCGCTGCATCCCTTACGCCTACGCTGACAAAATCGCCAAGAACTCCCTCACATCCCTCACCACCCTCATCACCACTACTCTCGGTGGTTCCTTCTCCCCTCCCCACTTCCCCCACAACCTTAACAAGTTCCTCAGGTACCACCCCATCAACGAATTCGAGTTCTTCTTCGAGAGCATCGGCATTCATCCCTCCAAGCTCGGTTCTTTGCTGCCCCAAGACAATTTTTTTTTCTCAGAAGATGATACCCTTTTGAATGCTGCTCGTGTTCTCCATGAATTTGGGTTTCCCTGGGACAGGCTTGGGATTTTGTATGTGGAGAGTGGCTGTTTTTTCAAGTGCGGTGCTTCTGAGTTGAAGGGTAGGCTTTGTGGGTTCAAAAGGTATGGTTTTTGCAATGCGCAGGTTGTGGGGATATGTTTGGCTTTTCCCTTTGTGTTTGATGGCCAAAAGGGTGATGAGGTTGAGGCTTTGTTTTGTGATCTGGGATTGCTGTTTGGGGAGCTTGGTTTGGCTGAGTGTGTTGAGGGGAAGGGGAACAATAGTGTTGATGATTGGATTGGGGTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGTGGGAGGAGCTTAGTGGAACTCGTTGGAGGGAACAATGGTGTTGGTGTAGGTGTCATTTTGGAGCATGGGGAAGAGGAGTTGGTTCAAGCAACTGAGTATTTTTGTAGTTTTGGTGCGAAGAAGGAGGATGTGGCGCGGTTGATTGTAGATGGACGGGAGTTGTTGGAGCTTGATTTGAAGACACGGGTGGTTGATGTGGTGAAGCTGTTGAAATACTTTGGAATGAGCTCCGACGATGTTGAGGATGTTAGGAGGGATTATGCTCATGTGTTGGGGACAGTTAAGATGGGTAATCTGCCCAACGTGATGAGGGCTTTGGGTTTACATGAATGGTTCTTTGGTAAGATCAAGGATGGGAATCATTGTTTGTTAGTTAGTTTTGTTGCGAGCTATCCCAATGAAGTCCAGGATGAAGGCTATCTAGGTTGCTTGAAGGCGATTCAGGAGTCGAGAACCCCAACTCACAATATTAGCAAGTTGAATTTCTTGCACGCCATTGGCTTTGGCGAAAATGCTTTGACCATGAATGTGTATGCTCAGATGCATGGAACAAGTGTCGAGTTACAAAAGAGATTTGATTGCCTTCTACGTCTTGGGATTGAGTTTTCGAAGGTCTGTAAGATGATCACGATTTATCCTAAGATTCTTAGCCAAAACCCTCAAAATTTAGAGCAAAAGGTTAATTTCTTTTGTCAAGAAATGGGACACTCGCTGGAGCATTTGGTAACTTTTCCAGCATTCTTGTGCTTTGACTTAGAGAACCGCATTAAGCCTAGGTACAGGTTCCATATGTGGATTATGGAAAAGGGTCTGTCTTCCAAAAAATATTCCATTGCAAGCATGGTTGCGACAAGCAACAAGAATTTTGTTGCTCGTGCTTTTAAAATTCACCCAGCTGCTCTGAAACATTGGTTTGAGCAATTCTATCCAAGAAATTTGCAAGTGTGATGACAATGATTTTTTACAATTGTGATTGTCTATGAAGCTCCAACAATTATTCCAAACTAATTTGTACAGATTCTTAAACTTGGTTACTTCCTATTTTTTGGTTTGGAGTTGAAGACAAACCTTTCGGAGTTTGGATATTGTTGGAGAAATTGTGAGAGAGGTGTATTTGCTTTGCAGTGATAGTGAGACATTGAGAATGACCTGGAAATTTCTTATCATGCTTTACTTCATTCTTATGACCTGATCTCAGTCCTGATTCAGACAGAAAGAAACCACAAATTCTGTGAACCATTAGTTGTGCTTCTTCAAAGTGATTATATCAGGTttgaaggggactcttctctccttaagagtattttggacaagtttaatggacttcaaacctatgttggtgagaggtttgactccttggaacttcaagtggacacacgattcgaggagatgaactcaaggattgcaaaggttgaagaagatgtcaccatcattcacgactgccttgatttacctccaccaccaccatcagtttagacattactattattattagtattttgatttctagccatgtatttggctttattagtatgacatttgaacacttatttcttttaatatttg

Coding sequences of Glyma.07G112100

Limit To All Plant Sequences

>Glyma.07g112100.1 sequence-type=CDS polypeptide=Glyma.07g112100.1.p locus=Glyma.07g112100 ID=Glyma.07g112100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAATCAAATTAAACAAGAGGAAACAGCAGTTGAAGAGGAGAAAAGCAAACAAAGCAAAGCAAAAACCCTGGCTTCAGTTCAGAGCAAAAAAAAAAAAAAAAAACATGTCCCTCCACCGCCATGTTTGCACAACCACCTCAAAGCTCTCAGCAGCAGCAGCAGCAGCGATCCCTTGGAAGTACAAGAAGTTCGCGATAGCACAGGGCCAGAAGTCCCTCACTGACTACCTCCACGCTACTCGCTGCATCCCTTACGCCTACGCTGACAAAATCGCCAAGAACTCCCTCACATCCCTCACCACCCTCATCACCACTACTCTCGGTGGTTCCTTCTCCCCTCCCCACTTCCCCCACAACCTTAACAAGTTCCTCAGGTACCACCCCATCAACGAATTCGAGTTCTTCTTCGAGAGCATCGGCATTCATCCCTCCAAGCTCGGTTCTTTGCTGCCCCAAGACAATTTTTTTTTCTCAGAAGATGATACCCTTTTGAATGCTGCTCGTGTTCTCCATGAATTTGGGTTTCCCTGGGACAGGCTTGGGATTTTGTATGTGGAGAGTGGCTGTTTTTTCAAGTGCGGTGCTTCTGAGTTGAAGGGTAGGCTTTGTGGGTTCAAAAGGTATGGTTTTTGCAATGCGCAGGTTGTGGGGATATGTTTGGCTTTTCCCTTTGTGTTTGATGGCCAAAAGGGTGATGAGGTTGAGGCTTTGTTTTGTGATCTGGGATTGCTGTTTGGGGAGCTTGGTTTGGCTGAGTGTGTTGAGGGGAAGGGGAACAATAGTGTTGATGATTGGATTGGGGTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGTGGGAGGAGCTTAGTGGAACTCGTTGGAGGGAACAATGGTGTTGGTGTAGGTGTCATTTTGGAGCATGGGGAAGAGGAGTTGGTTCAAGCAACTGAGTATTTTTGTAGTTTTGGTGCGAAGAAGGAGGATGTGGCGCGGTTGATTGTAGATGGACGGGAGTTGTTGGAGCTTGATTTGAAGACACGGGTGGTTGATGTGGTGAAGCTGTTGAAATACTTTGGAATGAGCTCCGACGATGTTGAGGATGTTAGGAGGGATTATGCTCATGTGTTGGGGACAGTTAAGATGGGTAATCTGCCCAACGTGATGAGGGCTTTGGGTTTACATGAATGGTTCTTTGGTAAGATCAAGGATGGGAATCATTGTTTGTTAGTTAGTTTTGTTGCGAGCTATCCCAATGAAGTCCAGGATGAAGGCTATCTAGGTTGCTTGAAGGCGATTCAGGAGTCGAGAACCCCAACTCACAATATTAGCAAGTTGAATTTCTTGCACGCCATTGGCTTTGGCGAAAATGCTTTGACCATGAATGTGTATGCTCAGATGCATGGAACAAGTGTCGAGTTACAAAAGAGATTTGATTGCCTTCTACGTCTTGGGATTGAGTTTTCGAAGGTCTGTAAGATGATCACGATTTATCCTAAGATTCTTAGCCAAAACCCTCAAAATTTAGAGCAAAAGGTTAATTTCTTTTGTCAAGAAATGGGACACTCGCTGGAGCATTTGGTAACTTTTCCAGCATTCTTGTGCTTTGACTTAGAGAACCGCATTAAGCCTAGGTACAGGTTCCATATGTGGATTATGGAAAAGGGTCTGTCTTCCAAAAAATATTCCATTGCAAGCATGGTTGCGACAAGCAACAAGAATTTTGTTGCTCGTGCTTTTAAAATTCACCCAGCTGCTCTGAAACATTGGTTTGAGCAATTCTATCCAAGAAATTTGCAAGTGTGA

>Glyma.07g112100.2 sequence-type=CDS polypeptide=Glyma.07g112100.2.p locus=Glyma.07g112100 ID=Glyma.07g112100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAATCAAATTAAACAAGAGGAAACAGCAGTTGAAGAGGAGAAAAGCAAACAAAGCAAAGCAAAAACCCTGGCTTCAGTTCAGAGCAAAAAAAAAAAAAAAAAACATGTCCCTCCACCGCCATGTTTGCACAACCACCTCAAAGCTCTCAGCAGCAGCAGCAGCAGCGATCCCTTGGAAGTACAAGAAGTTCGCGATAGCACAGGGCCAGAAGTCCCTCACTGACTACCTCCACGCTACTCGCTGCATCCCTTACGCCTACGCTGACAAAATCGCCAAGAACTCCCTCACATCCCTCACCACCCTCATCACCACTACTCTCGGTGGTTCCTTCTCCCCTCCCCACTTCCCCCACAACCTTAACAAGTTCCTCAGGTACCACCCCATCAACGAATTCGAGTTCTTCTTCGAGAGCATCGGCATTCATCCCTCCAAGCTCGGTTCTTTGCTGCCCCAAGACAATTTTTTTTTCTCAGAAGATGATACCCTTTTGAATGCTGCTCGTGTTCTCCATGAATTTGGGTTTCCCTGGGACAGGCTTGGGATTTTGTATGTGGAGAGTGGCTGTTTTTTCAAGTGCGGTGCTTCTGAGTTGAAGGGTAGGCTTTGTGGGTTCAAAAGGTATGGTTTTTGCAATGCGCAGGTTGTGGGGATATGTTTGGCTTTTCCCTTTGTGTTTGATGGCCAAAAGGGTGATGAGGTTGAGGCTTTGTTTTGTGATCTGGGATTGCTGTTTGGGGAGCTTGGTTTGGCTGAGTGTGTTGAGGGGAAGGGGAACAATAGTGTTGATGATTGGATTGGGGTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGTGGGAGGAGCTTAGTGGAACTCGTTGGAGGGAACAATGGTGTTGGTGTAGGTGTCATTTTGGAGCATGGGGAAGAGGAGTTGGTTCAAGCAACTGAGTATTTTTGTAGTTTTGGTGCGAAGAAGGAGGATGTGGCGCGGTTGATTGTAGATGGACGGGAGTTGTTGGAGCTTGATTTGAAGACACGGGTGGTTGATGTGGTGAAGCTGTTGAAATACTTTGGAATGAGCTCCGACGATGTTGAGGATGTTAGGAGGGATTATGCTCATGTGTTGGGGACAGTTAAGATGGGTAATCTGCCCAACGTGATGAGGGCTTTGGGTTTACATGAATGGTTCTTTGGTAAGATCAAGGATGGGAATCATTGTTTGTTAGTTAGTTTTGTTGCGAGCTATCCCAATGAAGTCCAGGATGAAGGCTATCTAGGTTGCTTGAAGGCGATTCAGGAGTCGAGAACCCCAACTCACAATATTAGCAAGTTGAATTTCTTGCACGCCATTGGCTTTGGCGAAAATGCTTTGACCATGAATGTGTATGCTCAGATGCATGGAACAAGTGTCGAGTTACAAAAGAGATTTGATTGCCTTCTACGTCTTGGGATTGAGTTTTCGAAGGTCTGTAAGATGATCACGATTTATCCTAAGATTCTTAGCCAAAACCCTCAAAATTTAGAGCAAAAGGTTAATTTCTTTTGTCAAGAAATGGGACACTCGCTGGAGCATTTGGTAACTTTTCCAGCATTCTTGTGCTTTGACTTAGAGAACCGCATTAAGCCTAGGTACAGGTTCCATATGTGGATTATGGAAAAGGGTCTGTCTTCCAAAAAATATTCCATTGCAAGCATGGTTGCGACAAGCAACAAGAATTTTGTTGCTCGTGCTTTTAAAATTCACCCAGCTGCTCTGAAACATTGGTTTGAGCAATTCTATCCAAGAAATTTGCAAGTGTGA

Predicted protein sequences of Glyma.07G112100

Limit To All Plant Sequences

>Glyma.07g112100.1.p sequence-type=predicted peptide transcript=Glyma.07g112100.1 locus=Glyma.07g112100 ID=Glyma.07g112100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQIKLNKRKQQLKRRKANKAKQKPWLQFRAKKKKKNMSLHRHVCTTTSKLSAAAAAAIPWKYKKFAIAQGQKSLTDYLHATRCIPYAYADKIAKNSLTSLTTLITTTLGGSFSPPHFPHNLNKFLRYHPINEFEFFFESIGIHPSKLGSLLPQDNFFFSEDDTLLNAARVLHEFGFPWDRLGILYVESGCFFKCGASELKGRLCGFKRYGFCNAQVVGICLAFPFVFDGQKGDEVEALFCDLGLLFGELGLAECVEGKGNNSVDDWIGVCRKIRLFYDLNGGRSLVELVGGNNGVGVGVILEHGEEELVQATEYFCSFGAKKEDVARLIVDGRELLELDLKTRVVDVVKLLKYFGMSSDDVEDVRRDYAHVLGTVKMGNLPNVMRALGLHEWFFGKIKDGNHCLLVSFVASYPNEVQDEGYLGCLKAIQESRTPTHNISKLNFLHAIGFGENALTMNVYAQMHGTSVELQKRFDCLLRLGIEFSKVCKMITIYPKILSQNPQNLEQKVNFFCQEMGHSLEHLVTFPAFLCFDLENRIKPRYRFHMWIMEKGLSSKKYSIASMVATSNKNFVARAFKIHPAALKHWFEQFYPRNLQV*

>Glyma.07g112100.2.p sequence-type=predicted peptide transcript=Glyma.07g112100.2 locus=Glyma.07g112100 ID=Glyma.07g112100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQIKLNKRKQQLKRRKANKAKQKPWLQFRAKKKKKNMSLHRHVCTTTSKLSAAAAAAIPWKYKKFAIAQGQKSLTDYLHATRCIPYAYADKIAKNSLTSLTTLITTTLGGSFSPPHFPHNLNKFLRYHPINEFEFFFESIGIHPSKLGSLLPQDNFFFSEDDTLLNAARVLHEFGFPWDRLGILYVESGCFFKCGASELKGRLCGFKRYGFCNAQVVGICLAFPFVFDGQKGDEVEALFCDLGLLFGELGLAECVEGKGNNSVDDWIGVCRKIRLFYDLNGGRSLVELVGGNNGVGVGVILEHGEEELVQATEYFCSFGAKKEDVARLIVDGRELLELDLKTRVVDVVKLLKYFGMSSDDVEDVRRDYAHVLGTVKMGNLPNVMRALGLHEWFFGKIKDGNHCLLVSFVASYPNEVQDEGYLGCLKAIQESRTPTHNISKLNFLHAIGFGENALTMNVYAQMHGTSVELQKRFDCLLRLGIEFSKVCKMITIYPKILSQNPQNLEQKVNFFCQEMGHSLEHLVTFPAFLCFDLENRIKPRYRFHMWIMEKGLSSKKYSIASMVATSNKNFVARAFKIHPAALKHWFEQFYPRNLQV*

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