SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08680.1 | AT | ATP synthase alpha/beta family protein | JGI | N/A | IEA |
| GO:0046034 | GO-bp | ATP metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0046034 | GO-bp | ATP metabolic process | JGI | N/A | IEA |
| GO:1902600 | GO-bp | proton transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| PTHR15184 | Panther | ATP SYNTHASE | JGI | N/A | IEA |
| PTHR15184:SF8 | Panther | ATP SYNTHASE SUBUNIT BETA, CHLOROPLASTIC | JGI | N/A | IEA |
| PF00006 | PFAM | ATP synthase alpha/beta family, nucleotide-binding domain | JGI | N/A | IEA |
| PF02874 | PFAM | ATP synthase alpha/beta family, beta-barrel domain | JGI | N/A | IEA |
| PWY-7219 | SoyCyc9 | adenosine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7229 | SoyCyc9 | superpathway of adenosine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-841 | SoyCyc9 | superpathway of purine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS |
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Glyma.07G108800 not represented in the dataset |
Glyma.07G108800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma07g14761 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g108800.1 sequence-type=CDS polypeptide=Glyma.07g108800.1.p locus=Glyma.07g108800 ID=Glyma.07g108800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACCGCGCTGGAGGTTTTGGATCACTCGTCGAGGCTTGTGTTGGAGGTGGCACAACATTTGGGTGAAGGCGTTGTCCGAACCATTGTTATGGATGCCTCAGAAGTACAGAGATGTATGCGAGAGGGTAATGACTTGTATAGAGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGAGAAGGTAATGACTTGTACAGAGAAATGATTGAGATTGGTGTCATTAAGCTTGATGATAAGCAGACTGAAAACAAGTGTGCTTTTGTGTATCGTCAAATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGGCTTACTATGGCTAAACACTTCCGTGATGCTAAAGGGCAAGATGTGCTTCTTTTCATAGACAACATTTTCCGTTTTACCCAAGCTAACTCAGATGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCAACCAACCTTGTCTACTGATCTTGGAGCTCTTCAAGAGCGTATTACAACAACTAAGAAGGGTTCAATTACCTATGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTATCACTTTTGCTCACTTGGATGCCACAACAGTGTTGTCACGACAGATCTCCGAGCTTGGTATCTATCCTATTGTTGAGTATTTGCTTAAAGTTCTAATGATACAGATAAATAAAGGGCATCAATATATTCGTTCTCAAGCAGTTTCATATTTCATATACTTGTTTAGACATAATTTTGTCTCATTCTATTTTCAATACGTCTGTATGTGA
>Glyma.07g108800.1.p sequence-type=predicted peptide transcript=Glyma.07g108800.1 locus=Glyma.07g108800 ID=Glyma.07g108800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTALEVLDHSSRLVLEVAQHLGEGVVRTIVMDASEVQRCMREGNDLYRGGFSVFAGVGERTREGNDLYREMIEIGVIKLDDKQTENKCAFVYRQMNEPPGARARVGLTGLTMAKHFRDAKGQDVLLFIDNIFRFTQANSDVSALLGRIPSAVGYQPTLSTDLGALQERITTTKKGSITYVQAIYVPADDLTDPAPAITFAHLDATTVLSRQISELGIYPIVEYLLKVLMIQINKGHQYIRSQAVSYFIYLFRHNFVSFYFQYVCM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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