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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56110.1 | AT | homolog of nucleolar protein NOP56 | JGI | N/A | IEA |
| GO:0000154 | GO-bp | rRNA modification | EnsemblGenomes | N/A | IEA |
| GO:0008272 | GO-bp | sulfate transport | EnsemblGenomes | N/A | IEA |
| GO:0055085 | GO-bp | transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:1902358 | GO-bp | sulfate transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0031428 | GO-cc | box C/D snoRNP complex | EnsemblGenomes | N/A | IEA |
| GO:0032040 | GO-cc | small-subunit processome | EnsemblGenomes | N/A | IEA |
| GO:0008271 | GO-mf | secondary active sulfate transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0015116 | GO-mf | sulfate transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0030515 | GO-mf | snoRNA binding | EnsemblGenomes | N/A | IEA |
| KOG2573 | KOG | Ribosome biogenesis protein - Nop56p/Sik1p | JGI | N/A | IEA |
| PTHR10894 | Panther | NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58) | JGI | N/A | IEA |
| PF01798 | PFAM | Putative snoRNA binding domain | JGI | N/A | IEA |
| PF08060 | PFAM | NOSIC (NUC001) domain | JGI | N/A | IEA |
| PF08156 | PFAM | NOP5NT (NUC127) domain | JGI | N/A | IEA |
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Glyma.07G102600 not represented in the dataset |
Glyma.07G102600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g102600 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma07g11560 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g102600.1 sequence-type=CDS polypeptide=Glyma.07g102600.1.p locus=Glyma.07g102600 ID=Glyma.07g102600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGCTGTTCCTCCTCTACGAGTCGGCGTCGGGTTACGCGCTCTTGGAGGCGCACGGCCTCGACGAAATCGGGCACACTACGGAGGCCGTTCGGAACTCCGTTTCCGACCTCAACAGGTTCGGCAAGGTCGTCAAGCTTCGCTCCTTCAACCCCTTCACCTCCGCCCTCGACGCTCTCAAACAGTGCAACGCCGTTTCCGAAGGGCTGTTGACTGATGAGCTGAGAACGGTTTTGGAGACTAACTTACCTAAAGTTAAGGAAGGTAAGAAGTCCAAGTTCAGTTTAGGTGTATCGGATCCAAAGATTGGTTCCCAGATATCTGAACTTACTAAAATTCCTTGCCAAAGTAATGAGTTTGTCGCCGAGCTGCTTCGCGGTGTGCGCCTCCATTTTGATAGGTTTGTCAGTGATCTCAAGTCCGGGGATTTGGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCAAAGGTGAAATTCAATGTTAACCGTGTTGACAACATGGTCATTCAAGCAATTTTCCTTCTTGATACACTTGATAAGGATATTAATTCATTCTCCATGAGAGTCAGAGAATGGTATTCTTGGCATTTTCCAGAACTGGTGAAGATTATAAATGATAATTATCTGTATGCCAAAGTTGCTAAATTTATTGAGGATAAATCAAAGCTGTCCGAAGACAAGATTTCATCCTTAACTGACATAGTTGGCGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAGGCTTCCATGGGACAAGATTTGTCCCCAGTGGACTTGGTTAATGTCCAACAATTTGCGCAAAGGGTGATGGACCTTTCTGAGTACAGGCGGAAGTTGTATGATTACCTGGTTGCTAAAATGAATGACATTGCGCCAAATTTGGCCTCTTTAATTGGTGAAGTTGTTGGTGCACGATTAATTTCCCATGCAGGTAGCCTCACAAATTTAGCTAAATGCCCTTCTTCAACTCTTCAAATTCTTGGTGCAGAGAAGGCTCTGTTCAGGGCATTAAAAACAAGAGGAAACACTCCTAAATATGGTCTGATATTCCACTCTTCTTTTATCGGTCGAGCATCTGCCAAAAATAAGGGCCGAATAGCTCGCTATCTTGCTAACAAATGTTCAATTGCTTCACGGATTGACTGCTTTTCTGAAAGGGGTACTACTACTTTTGGGGAGAAACTCCGTGAGCAAGTTGAGGAGCGACTTGATTTTTATGACAAGGGAGTTGCCCCTCGTAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGAAACCGAATATACAGCGATGGAAACAGAAGCACCAGTTGAAGTTTCAGGCAAGAAAGCCAAGAAGAAGAAGCATAAAGCTTCCGTTACAGATGATGGTGATAATATGGCTGTAGATAAGATCACAGAGACTACAAATGGTGATGCATTGGAGGATCATAAGTCAGAAAAGAAGAAGAAAAAGAAGGAAAAGAGGAAATTGGACTTGGAGGTGGAACTTAACGATCAAGCCATGGATGGTGGTGCTAATGGGGTTGAAAGCGAACAAGATGGAGCAGTTAAAAAGAAAAAGAAAAAGGATAAAAGGGGTGATAATGGAGAAGTACTAGAGGCTGCTATTGAGACTAAGAAGAAGAAAAAGAAATAA
>Glyma.07g102600.1.p sequence-type=predicted peptide transcript=Glyma.07g102600.1 locus=Glyma.07g102600 ID=Glyma.07g102600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALFLLYESASGYALLEAHGLDEIGHTTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISELTKIPCQSNEFVAELLRGVRLHFDRFVSDLKSGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIINDNYLYAKVAKFIEDKSKLSEDKISSLTDIVGDEDKAKEIVEAAKASMGQDLSPVDLVNVQQFAQRVMDLSEYRRKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASAKNKGRIARYLANKCSIASRIDCFSERGTTTFGEKLREQVEERLDFYDKGVAPRKNIDVMKSAIESVETEYTAMETEAPVEVSGKKAKKKKHKASVTDDGDNMAVDKITETTNGDALEDHKSEKKKKKKEKRKLDLEVELNDQAMDGGANGVESEQDGAVKKKKKKDKRGDNGEVLEAAIETKKKKKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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