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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45630.2 | AT | D-isomer specific 2-hydroxyacid dehydrogenase family protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0016618 | GO-mf | hydroxypyruvate reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0030267 | GO-mf | glyoxylate reductase (NADP) activity | EnsemblGenomes | N/A | IEA |
| GO:0048037 | GO-mf | cofactor binding | JGI | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | JGI | N/A | IEA |
| KOG0069 | KOG | Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) | JGI | N/A | IEA |
| PTHR10996 | Panther | 2-HYDROXYACID DEHYDROGENASE-RELATED | JGI | N/A | IEA |
| PTHR10996:SF15 | Panther | JGI | N/A | IEA | |
| PF00389 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | JGI | N/A | IEA |
| PF02826 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | JGI | N/A | IEA |
| PWY-181 | SoyCyc9 | photorespiration | Plant Metabolic Network | ISS | |
| GN7V-64068 | SoyCyc9-rxn | glyoxylate reductase (NADP+) | Plant Metabolic Network | ISS |
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Glyma.07G081800 not represented in the dataset |
Glyma.07G081800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g019900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g081800 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma07g08961 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g081800.1 sequence-type=CDS polypeptide=Glyma.07g081800.1.p locus=Glyma.07g081800 ID=Glyma.07g081800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTATGGCAGAAAAACACAACCACATTGATAATAAGGAGATTCAACCACTCCTTGTGTTTGGTCCTCCATTAATCTTCCCAACTTTTGAAGCTCGAAACTTTCACAAATACCGATTCCTCAAAGCTTTCTCCTCACAACTCCCTCTCCACCAATTCCTCACCGAGCAAAATGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTTCACAGCAGGTCTCTACAGATGTCATCCAGCTCCTCCCATCGCTCTGCGTCATTGTGACCAGCAGTGCTGGAACCGACCACATAGACTTGGTTGAGTGTAGCCACCATGGTATTCAGGTTGTCTCTGTTCCAGGAGATCAAGCCAAGGATGTTGCTGACATGGCTGTGGGGTTGTTGATTGATGTGTTGTGGAAAATTTCTGCCGCTGATCGACATGTTAGGAAATGGGGTCCTTCTATGCACCGGAACCTTTCTTTTGGTTCCAAGCTTAAAGGCAAGCGAGTAGGGATTGTTGGATTGGGAAAAATTGGCAAAGAAGTTGCTAAAAGGCTTGAGCCCTTTGGTTGCAGAATTATGTACCATTCGAGAAACCAGAAGCCATTTATCTCGTACCCTTTTTATTCTAAAGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTGTTGCCCACTTAACGAGCAATCAAGGCACTTAATCAACAGGGAAGTGATGTTGGCATTGGGGAAAGATGGAGCTATTGTCAACGTTGGACGTGGAGCTCTAATTGATGAAAAGGAATTGGTGCGGTGTTTGATGGAAGATGAGATAAGGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAACGAGCTCTTTCCATTGGATAATGTGGTCCTCTCCCCACATGCTGCTTCATTGACTTCAGATGGTTTCACTGAAGTATGTGAACTTGCAGCTGAGGCTCTAGAATTGTTCTTTTCAAGTAAATTACCAAGTATTCGATTGTTGGATGGCTAA
>Glyma.07g081800.1.p sequence-type=predicted peptide transcript=Glyma.07g081800.1 locus=Glyma.07g081800 ID=Glyma.07g081800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAMAEKHNHIDNKEIQPLLVFGPPLIFPTFEARNFHKYRFLKAFSSQLPLHQFLTEQNVDPSSIQAILCSPSQQVSTDVIQLLPSLCVIVTSSAGTDHIDLVECSHHGIQVVSVPGDQAKDVADMAVGLLIDVLWKISAADRHVRKWGPSMHRNLSFGSKLKGKRVGIVGLGKIGKEVAKRLEPFGCRIMYHSRNQKPFISYPFYSKVVELAGNSDVLVLCCPLNEQSRHLINREVMLALGKDGAIVNVGRGALIDEKELVRCLMEDEIRGAGLDVFENEPNVPNELFPLDNVVLSPHAASLTSDGFTEVCELAAEALELFFSSKLPSIRLLDG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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