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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23710.1 | AT | DNA binding;DNA-directed RNA polymerases | JGI | N/A | IEA |
| GO:0006351 | GO-bp | transcription, DNA-templated | JGI | N/A | IEA |
| GO:0006383 | GO-bp | transcription by RNA polymerase III | EnsemblGenomes | N/A | IEA |
| GO:0005666 | GO-cc | DNA-directed RNA polymerase III complex | EnsemblGenomes | N/A | IEA |
| GO:0001056 | GO-mf | RNA polymerase III activity | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003899 | GO-mf | DNA-directed RNA polymerase activity | JGI | N/A | IEA |
| KOG3233 | KOG | RNA polymerase III, subunit C34 | JGI | N/A | IEA |
| PTHR12780 | Panther | RNA POLYMERASE III (DNA DIRECTED), 39KD SUBUNIT-RELATED | JGI | N/A | IEA |
| PF05158 | PFAM | RNA polymerase Rpc34 subunit | JGI | N/A | IEA |
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Glyma.07G041800 not represented in the dataset |
Glyma.07G041800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g041800 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma07g04660 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g041800.1 sequence-type=CDS polypeptide=Glyma.07g041800.1.p locus=Glyma.07g041800 ID=Glyma.07g041800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTGCCTCTCTCCTTTTCCCCCAAAATCTGCTTCAGTTCACGTTCACGCTTCGCTACCTGCGCCTATTCATTGTCTCTTCTCTTCCCCTGCTCAACGTTTTTCTTCTCCCTTCCCCCACCCACCTCCACTCTTTTCATTTCTATTCTCTTCCCAAACAGAACGACCATCGGAACAAACGGCATTTTGTCAAACAGTTACGAGGGGACAAAACAAAACAATGAGCAGCGTTTTGCAAGGGAAACGCAAGCGCCAGGACTTGGCTTCAAGGCTCTCGGCCTCAATGAATAATGAGGAGGGTCGTGTCTACAACATCATTCGCGGGAGGAAGGAGATGGGGATATGGCAAGGGGACATCAAACGAGAAGCCAACATCCCCGATAGTTTGTTGAAGAAATCCATCAAGATGCTTATCACCAAGAAACTCGTCAAGGAGGTTGTGAACGTGCAGAACAGGTCCAAGAAGTTGTTGATGGCATCGGATTTCGAACCCTCCAATGAGATCAGTGGTGGAGAGTGGTACACCGAAGGCAAACTCGACACAGAATTTATTGACAAGCTGTCTGAGGCTTGCTTTAGTAGTATTCGTCGCCTGAAGGTCGCGACTTGTGAGGGCATCCTTGAGTGGATTAGGAAGGCGGGTGGTGGAGTCAGTAAAGGGCAGATGGAGCAGATTTTGAAGAAGTTGGTTATGGAGAATAAGGTGCAGGAAGTGACTAGTGATGGCTCTGGGGATTTTGAGTCTGTTCCTGTTGGTGAAGTTTGTTATAGATTGGTGAAGAAGGCTGCTGGTGTTGGTGCCATGGCTTCTATTCCTTGTGGGGTTTGTCCTAGGATTAATTCTTGTACACCCGATGGTGTTATCTCCCCTACAACTTGTCAATATTATCAGAAATGGTTGGACTTCTAA
>Glyma.07g041800.1.p sequence-type=predicted peptide transcript=Glyma.07g041800.1 locus=Glyma.07g041800 ID=Glyma.07g041800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MCLSPFPPKSASVHVHASLPAPIHCLFSSPAQRFSSPFPHPPPLFSFLFSSQTERPSEQTAFCQTVTRGQNKTMSSVLQGKRKRQDLASRLSASMNNEEGRVYNIIRGRKEMGIWQGDIKREANIPDSLLKKSIKMLITKKLVKEVVNVQNRSKKLLMASDFEPSNEISGGEWYTEGKLDTEFIDKLSEACFSSIRRLKVATCEGILEWIRKAGGGVSKGQMEQILKKLVMENKVQEVTSDGSGDFESVPVGEVCYRLVKKAAGVGAMASIPCGVCPRINSCTPDGVISPTTCQYYQKWLDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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