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Report for Sequence Feature Glyma.07G028400

Feature Type:gene_model
Chromosome:Gm07
Start:2278193
stop:2281772
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.07G028400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57300.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0006744GO-bp ubiquinone biosynthetic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0031314GO-cc extrinsic component of mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008425GO-mf 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0043333GO-mf 2-octaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity EnsemblGenomesN/AIEA
KOG1540 KOG Ubiquinone biosynthesis methyltransferase COQ5 JGI N/AIEA
PTHR10108Panther METHYLTRANSFERASE JGI N/AIEA
PTHR10108:SF24Panther 2-METHOXY-6-POLYPRENYL-1,4-BENZOQUINOL METHYLASE, MITOCHONDRIAL JGI N/AIEA
PF01209PFAM ubiE/COQ5 methyltransferase family JGI N/AIEA
GN7V-41683SoyCyc9-rxn 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase Plant Metabolic Network ISS

Expression Patterns of Glyma.07G028400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.07G028400 not represented in the dataset
Glyma.07G028400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.07G028400
ParalogEvidenceComments
Glyma.08g214400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.07G028400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g028400 Wm82.a4.v1ISS As supplied by JGI
Glyma07g03210 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.07G028400
>Glyma.07g028400.2 sequence-type=transcript locus=Glyma.07g028400 ID=Glyma.07g028400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCATATCGATGGAGCAACGGTACAAGCCCAATAGGGTGCCTGAGGCGACGGGTCTGGCGGTTGCTCTCGTCTCAGCTTCGCGTGATGTTTCCATGCTCTTTTCTCTATGCTATTAACCGATTAATCGATCAATATTTTTCTGATTCTGATTGTGATTCAATTTCGCTCATTTATCGGAGCGAGAAACCATGGCTTTGGGAACGGTGACTCGACGGTTGGGGAATAAACTCTTCACCGTGTTATCTCCCACTCCCAGGCTACTACATTCTCACGCCACCAGTTTCGGTTCGTTTTCACTCTCCGCATTCAAATTTCAATTCACAATTAAAAATAAATGATATTATGACAGAATTTCAGGGTTCAAACAAGTAAACGAAGATGAGAAGGCTCGCATGGTTGGTGATGTCTTCACGAGTGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGTTGGATTGCATAGATTGTGGAAGGATAGGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAGGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAGGACTTCGAGGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATATGTATGTGACATTAACCCTAAGATGTTAAATGTTGGCAAACGGCGGGCCTCAGAGAAGGGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAAATGATTCAATGGATGGTTATACTATTGCATTCGGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAGGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTGTATGACTATTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGCTAGTGACCGGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCTCACAGGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCTGATATTTTTGAACTTTCCTCTCAATTATTATGTCTCTAATAATTCATGCATCTTTCTCCACCGTCTACAGGCGTGGAGACTGAAGGTCAAATGTAATGTTATTAGAATTCGTAGAGAAGATTTGAGTTGTCAGAATGTGTACTGTAATTTCGATAGTATGGCGTTTGCAATTTTTTTTACAGGGACTCAAGTTTTCTTGAAACATGTATATACGCCTATCATACGAAGAGTAAATAGTTTTGATTTTTTTACCAAAAAAATAAATAGTTTTATTCCT

>Glyma.07g028400.3 sequence-type=transcript locus=Glyma.07g028400 ID=Glyma.07g028400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCATATCGATGGAGCAACGGTACAAGCCCAATAGGGTGCCTGAGGCGACGGGTCTGGCGGTTGCTCTCGTCTCAGCTTCGCGTGATGTTTCCATGCTCTTTTCTCTATGCTATTAACCGATTAATCGATCAATATTTTTCTGATTCTGATTGTGATTCAATTTCGCTCATTTATCGGAGCGAGAAACCATGGCTTTGGGAACGGTGACTCGACGGTTGGGGAATAAACTCTTCACCGTGTTATCTCCCACTCCCAGGCTACTACATTCTCACGCCACCAGTTTCGAATTTCAGGGTTCAAACAAGTAAACGAAGATGAGAAGGCTCGCATGGTTGGTGATGTCTTCACGAGTGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGTTGGATTGCATAGATTGTGGAAGGATAGGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAGGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAGGACTTCGAGGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATATGTATGTGACATTAACCCTAAGATGTTAAATGTTGGCAAACGGCGGGCCTCAGAGAAGGGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAAATGATTCAATGGATGGTTATACTATTGCATTCGGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAGGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTGTATGACTATTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGCTAGTGACCGGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCTCACAGGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCTGATATTTTTGAACTTTCCTCTCAATTATTATGTCTCTAATAATTCATGCATCTTTCTCCACCGTCTACAGGCGTGGAGACTGAAGGTCAAATGTAATGTTATTAGAATTCGTAGAGAAGATTTGAGTTGTCAGAATGTGTACTGTAATTTCGATAGTATGGCGTTTGCAATTTTTTTTACAGGGACTCAAGTTTTCTTGAAACATGTATATACGCCTATCATACGAAGAGTAAATAGTTTTGATTTTTTTACCAAAAAAATAAATAGTTTTATTCCT
Coding sequences of Glyma.07G028400
>Glyma.07g028400.1 sequence-type=CDS polypeptide=Glyma.07g028400.1.p locus=Glyma.07g028400 ID=Glyma.07g028400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTGGGAACGGTGACTCGACGGTTGGGGAATAAACTCTTCACCGTGTTATCTCCCACTCCCAGGCTACTACATTCTCACGCCACCAGTTTCGGGTTCAAACAAGTAAACGAAGATGAGAAGGCTCGCATGGTTGGTGATGTCTTCACGAGTGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGTTGGATTGCATAGATTGTGGAAGGATAGGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAGGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAGGACTTCGAGGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATATGTATGTGACATTAACCCTAAGATGTTAAATGTTGGCAAACGGCGGGCCTCAGAGAAGGGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAAATGATTCAATGGATGGTTATACTATTGCATTCGGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAGGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTGTATGACTATTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGCTAGTGACCGGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCTCACAGGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCTGA

>Glyma.07g028400.2 sequence-type=CDS polypeptide=Glyma.07g028400.2.p locus=Glyma.07g028400 ID=Glyma.07g028400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGGTGATGTCTTCACGAGTGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGTTGGATTGCATAGATTGTGGAAGGATAGGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAGGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAGGACTTCGAGGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATATGTATGTGACATTAACCCTAAGATGTTAAATGTTGGCAAACGGCGGGCCTCAGAGAAGGGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAAATGATTCAATGGATGGTTATACTATTGCATTCGGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAGGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTGTATGACTATTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGCTAGTGACCGGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCTCACAGGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCTGA

>Glyma.07g028400.3 sequence-type=CDS polypeptide=Glyma.07g028400.3.p locus=Glyma.07g028400 ID=Glyma.07g028400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGGTGATGTCTTCACGAGTGTTGCTTCAAGCTACGATCTCATGAATGACCTAATGAGTGTTGGATTGCATAGATTGTGGAAGGATAGGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAGGGGATGTTGCTTTTAGAATCTTGGAGAGCATACACAAAGTTAAGCTGAGAGGACTTCGAGGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATATGTATGTGACATTAACCCTAAGATGTTAAATGTTGGCAAACGGCGGGCCTCAGAGAAGGGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAAATGATTCAATGGATGGTTATACTATTGCATTCGGGATAAGAAATGTTACACATATAGAGAAAGTACTCAGTGAAGCTCATAGGGTATTGAAACCGGGAGGCAGGTTCCTTTGCCTTGAACTGAGTCATGTTGGCATTCCTGTATTTAAAGATTTGTATGACTATTATTCTTTCTCAGTTATTCCATACATGGGTGAGCTGGTTGCTAGTGACCGGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCTCACAGGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCTGA
Predicted protein sequences of Glyma.07G028400
>Glyma.07g028400.1.p sequence-type=predicted peptide transcript=Glyma.07g028400.1 locus=Glyma.07g028400 ID=Glyma.07g028400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALGTVTRRLGNKLFTVLSPTPRLLHSHATSFGFKQVNEDEKARMVGDVFTSVASSYDLMNDLMSVGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILESIHKVKLRGLRGAFQDTLEAETQIYVCDINPKMLNVGKRRASEKGFGEDGSLVWVEGNAESLSFQNDSMDGYTIAFGIRNVTHIEKVLSEAHRVLKPGGRFLCLELSHVGIPVFKDLYDYYSFSVIPYMGELVASDRESYQYLVESIRRFPSQEKFASMIADAGFQKVEYENLVAGVVAIHSGLKI*

>Glyma.07g028400.2.p sequence-type=predicted peptide transcript=Glyma.07g028400.2 locus=Glyma.07g028400 ID=Glyma.07g028400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGDVFTSVASSYDLMNDLMSVGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILESIHKVKLRGLRGAFQDTLEAETQIYVCDINPKMLNVGKRRASEKGFGEDGSLVWVEGNAESLSFQNDSMDGYTIAFGIRNVTHIEKVLSEAHRVLKPGGRFLCLELSHVGIPVFKDLYDYYSFSVIPYMGELVASDRESYQYLVESIRRFPSQEKFASMIADAGFQKVEYENLVAGVVAIHSGLKI*

>Glyma.07g028400.3.p sequence-type=predicted peptide transcript=Glyma.07g028400.3 locus=Glyma.07g028400 ID=Glyma.07g028400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGDVFTSVASSYDLMNDLMSVGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILESIHKVKLRGLRGAFQDTLEAETQIYVCDINPKMLNVGKRRASEKGFGEDGSLVWVEGNAESLSFQNDSMDGYTIAFGIRNVTHIEKVLSEAHRVLKPGGRFLCLELSHVGIPVFKDLYDYYSFSVIPYMGELVASDRESYQYLVESIRRFPSQEKFASMIADAGFQKVEYENLVAGVVAIHSGLKI*






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