SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G21250.2 | AT | multidrug resistance-associated protein 6 | JGI | N/A | IEA |
| GO:0006810 | GO-bp | transport | JGI | N/A | IEA |
| GO:0055085 | GO-bp | transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0055085 | GO-bp | transmembrane transport | JGI | N/A | IEA |
| GO:0000325 | GO-cc | plant-type vacuole | EnsemblGenomes | N/A | IEA |
| GO:0005774 | GO-cc | vacuolar membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | EnsemblGenomes | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | JGI | N/A | IEA |
| GO:0042626 | GO-mf | ATPase activity, coupled to transmembrane movement of substances | EnsemblGenomes | N/A | IEA |
| GO:0042626 | GO-mf | ATPase activity, coupled to transmembrane movement of substances | JGI | N/A | IEA |
| KOG0054 | KOG | Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily | JGI | N/A | IEA |
| PTHR24223 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24223:SF203 | Panther | MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 | JGI | N/A | IEA |
| PF00005 | PFAM | ABC transporter | JGI | N/A | IEA |
| PF00664 | PFAM | ABC transporter transmembrane region | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ABCC8 | ABC Transporter C8 |
|
Glyma.07G011600 not represented in the dataset |
Glyma.07G011600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g194600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g011600 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma07g01390 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.07g011600.1 sequence-type=CDS polypeptide=Glyma.07g011600.1.p locus=Glyma.07g011600 ID=Glyma.07g011600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATCTATATGCAGATGATTTCTCATGGACTTGTCTGAAGGATTTTGAATTCACTTCTTTCTGTTCGCAAAGAACCACAATAGACACCATAAATCTACTTTTTGTGTGTTTCTTCTACACGTCTATGATTATCAGTATAATCAGAAGATGTTCTATAAGTTGTAGTTTCAGGACAAAATGGACTTTCCTTGTTGCCTCTATCTGCTGCGCTATTATTAGCATTGCTTTTTACAGTATTGGCTTGTGGATTCTCATAGTCAAAACTGATAACACCAAGCAACTGAGCTGGGTAGCTTGCGTTGTCAGAGGATTTGTTTGGACTTCTTTGGCAGTTTCTCTGCTTGTTCAGAGAGAAAAATGGATCAAAATTCTGAACTGTGCCTGGTGGACATGTTCCTGTGTACTGGTTTCATCTCTCATCATAGAGATTCTGTTGAGAAAGCATGCAATAGAAATTTTTGATATAGTACAATGGCTTACACACTTCCTTCTTCTGTTTTGTGCCTTCCAAAATCTATGTTACTATGTCTCTCAAAGTCTGCCAGAAAGCTTATCTGAACCACTGTTAGCTCAAGAAGTTGACACTAAACAAACAGAACTAGGCCATAGTACCTTTCTCAGCAAATTGACTTTCTCTTGGGTTAACTCCTTACTCCGTCTGGGTTACTCAAAGCCACTAGCTCTTGAAGACATCCCTTCCCTTCTTTCTGAAGATGAAGCAGAATTTGCGTACCAAAACTTTATGCATACATGGGAATCCCTTGTAAGGGAGAGTAGCAAGGACAATACCAAAAACTTGGTTCTCTGGTCTGTTGTTAGAACTCACTTAAAAGAGAACATACTCATAGCTTTTTATGCACTACTTAGAACCATAGCTGTGACTGTTTCGCCTTTAATACTTTATGCTTTTGTCAACTACTCAAATAGCAGGGATGCCAAGCAAACAAATCTCAAAGAAGGTCTTTCCATAGTTGGTTTTCTTATTCTCTCCAGAGTGGTTGATTCTGTGTCCCAGAGACATTGGTTTTTTGATTCCAGGAGATCAGGATTGAAGATAAGATCAGCTCTGATGGTGGCAGTGTATAAAAAACAGCTAAAGCTTTCTAGCTCGGCAAGGAGAAGGCACTCAACAGGTGAAATTGTGAATTACATTGCTGTTGACACATATCGTATGGGAGAATTTCCATGGTGGTTTCATATATCATGGACTTCTGCAGTACAACTTGTTCTCTCTGTTGGTGTCCTTTTTGGTGTTGTTGGTGTTGGTGCTCTTCCTGGTTTAGTCCCACTTGTTATATGTGGACTTATCAATGTACCATTTGCTAAGATCCTACAACATTGTATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTGAATAGCATGAAAATCATTAAGTTACAATCCTGGGAGGACAAATTCAAGAATTTGGTTGAGAACCTACGTGCTAAAGAGTTCATCTGGCTGTCTAAGTCACAGATGATGAAATCTTATGGAACATTTCTGTATTGGATGTCACCTACCATCGTTTCTGCTGTTGTTTTCCTCGGTTGTGCTCTTTTCAATAGTGCCCCGTTGAATGCTGGAACCATTTTCACAGTTTTTGCAACGTTGAGGAACTTGTCAGAACCTGTTCGAATGATTCCAGAGGCTCTATCCATGATGATCCAAGTTAAGGTATCCTTTGATCGTCTCAATACCGTTTTGCTTGATGAAGAGCTAGATAGTAGCAATGCTAACAGAAGAAATATAAACCAAAGTTCGGTTAATGCTGTGGAAATCCAAGCCGGAAATTTCATTTGGGATCACGAATCAGTATTTCCAACTTTAAGAGATGTGAATTTACAAATTGAACAAGGACAGAAAATCGCAGTTTGTGGGCCTGTTGGCGCTGGAAAATCATCTCTTTTATTTGCAGTACTTGGAGAGTTTCCAAAGATCTCAGGAACCGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAACAAGATATGATGATGCCATTAAAGTTTGTGCTTTAGACAAGGATATTAATGATTTTAGCCATGGTGATCTGACTGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTACAATGACGCTGACATCTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTCTTCAATGACTGTGTAATGATGGCTCTAAGAGAGAAAACAGTCATTCTAGTCACTCATCAAGTGGAGTTTCTCTCACAAGTGGATACAATCCTGGTAATGGAAGGTGGAAAAGTTACTCAAGCAGGTAATTATGTGAATCTCTTGACATCTGGGACAGCCTTTGAACAACTTGTGAGCGCTCATAAGGAAGCAATTTCAGAGTTGGAACAAAATAATGAAAACAAAACTCATACAGAAGAGTCTCAAGGTTTTTATCTCACTAAAAACCAAAGTGAGGGGGAGATTTCTTACAAGGGTCAACTTGGGGTACAGCTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTGGAAGACAATCTGGGATTATATTTCATTTTCCAGGTGTTCAATGATGCTGTGTTGGATCATATTGGGACAATTTGCTTTTGTTGTTTTACAGGCTGCGTCAACGTTTTGGCTTGTTCAAGCCATTGAAATTCCAAAATTAAGTAGTGTCACCTTGATTGGAGTTTACTCATTAATTTCATTTGGTGGTACTGTATTTGCATTTCTAAGGACTAGCATTGGTGCACACCTCGGATTAAAAGCTTCTACAGCCTTCTTCTCAAGTTTCACTACTTCTATCTTCAATGCTCCTATGCTGTTCTTTGATTCAACCCCTGTAGGAAGGATTTTAACCCGCGCATCATCAGATTTAACTATTTTGGACTTTGATATACCCTTTTCCATCACTTTTGTAGCTTCTGTTCCAATTGAAATTTTGATGATAATTGGTATAATGGTTTACGTAACATGGCAAGTTCTCATTGTTGCTGTTCCAGCAATGGTTGCATCAAAATATGTTCAGGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTACTGTAAGAGCATTTAATATGGCAGACAGATTTTTTAAAAATTACTTAAAACTTGTGGACACAGACGCAGCACTGTTCTTTTATTCTAATGCGGCCATGGAATGGTTAGTTTTAAGGATTGAAACTCTTCAAAATTTGACAGTCATCACTGCAGCTTTGCTGCTTGTTCTAGTTCCTCAGGGATACGTGTCCCCAGGCCTTGTGGGGCTGTCTCTCTCTTATACATTCACCTTGACAGGAACCCAAATATTTTTGACTCGATGGTATTGCAACTTATTAAACTATATTATCTCTGTTGAGAGAATCAAGCAATTCATTCAGCTTCCAGAAGAGCCTCCTGCCATTGTGGAGGACAACCGGCCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGATAAGATATCGTCCTAATGCTCCATTAGTGCTTAAGGGTATCACTTGTACGTTTAAGGAAGGAAGTAGAGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACGCTCATAAGTGCTCTTTTTCGCTTAGTTGAGCCAGCAAGTGGTGATATTCTTATAGATGGGATTAACATATGCTCAATAGGGTTGAAGGATTTGAAAATAAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGAACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGATTTATGGAAGGCATTAGAAAAATGTCAGCTTAAGGAAACTATCAGCCGTCTACCAAATCTCTTGGACTCTTTGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAGCGCCAACTATTTTGTCTTGGAAGAGTACTACTTAAGAGGAACAGAATTCTAGTTCTGGATGAAGCTACCGCATCCATTGACTCTGCCACAGATGCCATTCTACAACAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGGGAAACTTGTGGAATATGATGAGCCTTCAAAGCTAATGGACACCAACTCCTCGTTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGAAAGAATTCTCCACAAACGTTAGCAGGCAGCAACATTGAATAA
>Glyma.07g011600.1.p sequence-type=predicted peptide transcript=Glyma.07g011600.1 locus=Glyma.07g011600 ID=Glyma.07g011600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDLYADDFSWTCLKDFEFTSFCSQRTTIDTINLLFVCFFYTSMIISIIRRCSISCSFRTKWTFLVASICCAIISIAFYSIGLWILIVKTDNTKQLSWVACVVRGFVWTSLAVSLLVQREKWIKILNCAWWTCSCVLVSSLIIEILLRKHAIEIFDIVQWLTHFLLLFCAFQNLCYYVSQSLPESLSEPLLAQEVDTKQTELGHSTFLSKLTFSWVNSLLRLGYSKPLALEDIPSLLSEDEAEFAYQNFMHTWESLVRESSKDNTKNLVLWSVVRTHLKENILIAFYALLRTIAVTVSPLILYAFVNYSNSRDAKQTNLKEGLSIVGFLILSRVVDSVSQRHWFFDSRRSGLKIRSALMVAVYKKQLKLSSSARRRHSTGEIVNYIAVDTYRMGEFPWWFHISWTSAVQLVLSVGVLFGVVGVGALPGLVPLVICGLINVPFAKILQHCMAQFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLVENLRAKEFIWLSKSQMMKSYGTFLYWMSPTIVSAVVFLGCALFNSAPLNAGTIFTVFATLRNLSEPVRMIPEALSMMIQVKVSFDRLNTVLLDEELDSSNANRRNINQSSVNAVEIQAGNFIWDHESVFPTLRDVNLQIEQGQKIAVCGPVGAGKSSLLFAVLGEFPKISGTVNVSGTVAYVSQTSWIQSGTVRDNILFGKPMDKTRYDDAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMMALREKTVILVTHQVEFLSQVDTILVMEGGKVTQAGNYVNLLTSGTAFEQLVSAHKEAISELEQNNENKTHTEESQGFYLTKNQSEGEISYKGQLGVQLTQEEEKEIGDVGWKTIWDYISFSRCSMMLCWIILGQFAFVVLQAASTFWLVQAIEIPKLSSVTLIGVYSLISFGGTVFAFLRTSIGAHLGLKASTAFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLTILDFDIPFSITFVASVPIEILMIIGIMVYVTWQVLIVAVPAMVASKYVQGYYQASARELIRINGTTKAPVMNFAAETSLGLVTVRAFNMADRFFKNYLKLVDTDAALFFYSNAAMEWLVLRIETLQNLTVITAALLLVLVPQGYVSPGLVGLSLSYTFTLTGTQIFLTRWYCNLLNYIISVERIKQFIQLPEEPPAIVEDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSIGLKDLKIKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDLWKALEKCQLKETISRLPNLLDSLVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQIIRQEFAKCTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSPQTLAGSNIE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
