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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71340.1 | AT | PLC-like phosphodiesterases superfamily protein | JGI | N/A | IEA |
| GO:0006071 | GO-bp | glycerol metabolic process | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0008081 | GO-mf | phosphoric diester hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0008889 | GO-mf | glycerophosphodiester phosphodiesterase activity | EnsemblGenomes | N/A | IEA |
| GO:0008889 | GO-mf | glycerophosphodiester phosphodiesterase activity | JGI | N/A | IEA |
| KOG2258 | KOG | Glycerophosphoryl diester phosphodiesterase | JGI | N/A | IEA |
| PTHR23344 | Panther | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE | JGI | N/A | IEA |
| PF03009 | PFAM | Glycerophosphoryl diester phosphodiesterase family | JGI | N/A | IEA |
| PWY-6952 | SoyCyc9 | glycerophosphodiester degradation | Plant Metabolic Network | ISS | |
| GN7V-65753 | SoyCyc9-rxn | glycerophosphodiester phosphodiesterase | Plant Metabolic Network | ISS |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g48210 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g323800.1 sequence-type=CDS polypeptide=Glyma.06g323800.1.p locus=Glyma.06g323800 ID=Glyma.06g323800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATGCAGAGTTCAAGATCACGAAAAGCAGCGTTGAGAGTCAGAGTTCCTTCGCGGAAGCTGATGATTCTCTCTCTGGCCATTTTCGCCATTCTCCCTCCCATTTTCTTCCACTTCCGCCTCCGACGCCTCCAACAGCTGCAATTCACAAAGTGCCGTTGGCTCAACGATCCTCCTCTGGTCTGCGCCCACGGTGGCGATTCTTCCAAGGCTTCTCCAAACACCATGGCGTCCTATTTCCACGCTCTTCAGTCTCGCGTCGACTGCATTGAGATCGACGTTTCTCGTTCTTCTGACGGAGTTCTCTTTGCTCTCCATGACAGGGATTTGCAGCGCTTAACTGGAAGCGCTACTTCTAAAGTTGGTTACTTGAACTCAAAAGAGATTAGAGAGCTTAGTGCTTCACGTCAGTCTACCTCCAAGTTTACTGATCAAAGTATACTTACAATCCAAGATGCTCTGATGTTGACTGCAAATTCAGTACGCCAGATAGTTCTAGATGTTAAGGTTGGGCCCCCATTTTATGAGAAAGAGCTTGCCAAAGATGTTCTCTCTATTGTGGAGAAGACGGAGTGCAGCAATTGCCTCATATGGGCTAAAAGTGACATTTTAGCAAGAGATGTAATTAAACTCTCATCAGAAATTACAGTTGGCTACATTGTTATGAGAGAACCTTCTACTGGAGCTAGGACAAATTTGTTGAGAATGAAAGGTGCTGAGGTTGTTGGTGTCTATCATCCACTGATTGATGAAAATCTTGTGAAAGTTTTGCACAGGAGGAACAAAAAGGTGTATGCCTGGACAGTTGATGATGTAGAATCCATGCAAAAGGTGTTGTTTGAACATGTTGATGCTATTGTTACGAGCAACCCGACTTTTCTTCAACGCCTAATGCAAGATATCAAAACACAATGTCTTGAAGAGGGTTATTCATTACCACGCTAA
>Glyma.06g323800.1.p sequence-type=predicted peptide transcript=Glyma.06g323800.1 locus=Glyma.06g323800 ID=Glyma.06g323800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MMQSSRSRKAALRVRVPSRKLMILSLAIFAILPPIFFHFRLRRLQQLQFTKCRWLNDPPLVCAHGGDSSKASPNTMASYFHALQSRVDCIEIDVSRSSDGVLFALHDRDLQRLTGSATSKVGYLNSKEIRELSASRQSTSKFTDQSILTIQDALMLTANSVRQIVLDVKVGPPFYEKELAKDVLSIVEKTECSNCLIWAKSDILARDVIKLSSEITVGYIVMREPSTGARTNLLRMKGAEVVGVYHPLIDENLVKVLHRRNKKVYAWTVDDVESMQKVLFEHVDAIVTSNPTFLQRLMQDIKTQCLEEGYSLPR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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