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Report for Sequence Feature Glyma.06g322700

Feature Type:gene_model
Chromosome:Gm06
Start:51094342
stop:51096838
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g322700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10170.1AT SNARE-like superfamily protein JGI N/AIEA
GO:0006887GO-bp exocytosis EnsemblGenomesN/AIEA
GO:0006906GO-bp vesicle fusion EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0031201GO-cc SNARE complex EnsemblGenomesN/AIEA
GO:0000149GO-mf SNARE binding EnsemblGenomesN/AIEA
GO:0005484GO-mf SNAP receptor activity EnsemblGenomesN/AIEA
KOG0859 KOG Synaptobrevin/VAMP-like protein JGI N/AIEA

Expression Patterns of Glyma.06g322700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g322700
ParalogEvidenceComments
Glyma.04g111600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g322700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g48100 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g322700
>Glyma.06g322700.2 sequence-type=transcript locus=Glyma.06g322700 ID=Glyma.06g322700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAAAAACTGTCTTTCTTCCTTCTTCGCTGAACCCTCCCTCCCTCTCCGACATGGCTGTGTGAATGTGATGAATCTTATGGTTTATAAAAGTGGTCCACGCTAATCTTCGTCCAGTTTAAATTATTAAATTTTGAATAAACTGTTGTTATGGAAACCAAATCCAAAAAGAATATCAATATATTATCATTCATTGCCAGCTACCAATACACTGTATATAAATAAATTTTCAAAGTAAAACCAAAAGCAGAAAACATTGCATGTTAAGATTCACCCACATTACACGGTTTGTGTTGTGTTGTGCCTGCCCTGTCCGTGGCATTTTCGtctttctctaatttcttcttctttctttctctcACTTCTCTTTTGAATCAATCTCATCTCATCCCTAACAACCACACATGCACGCACCACCATCAGGTTTTTTACTTCATAGCTGCAGAATTCCTTGCACTTTGCTTGGTTTTTGTCTCTTTCCTTGAGGGTTATCGGATTCTTCCTTTGCCAAATCTTGACTGCTATGTTCTTCAGTTGGGATGAAACATGATGAAGACTTCGGCTCGATTTTACAATAAAGGGATATTGGTATTCAGTGAAGTGAAGTTAACATTTGAGATACAGAACAAGAGAAAAGCAAATTTGATGTAACTTTTTCTGATTTTTTGGCCTGGTATTGTAGAGGAGTTTGGTTGAAATCTGATCAGGGTTATTGTTTACTGATTTTCGATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCATGTATGTGTATAGTGGTGGAGACCAAGAAGATGAGAATGTCGCAGCCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGGACTTTTGGTTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTTTTGGTAACCCGGTTGTTCTTCAGTTTCTGGAGCATGTTAGAGACGAGTTTAAAAAGCTGTCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATCCGCGGCCTGATCACTTCATTGGAGAGTGTTTCACATGGTAGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCGTCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCGTTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTGATTGCTATGAGAGACGTTGAGTTGGAGGAGCATCGGAAATCTACAGATAGAGGAGCAAGGGTCGATTCAGGCAATCTGGATGGTGTAAGCCAAGGTGGTGCAGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTCCTAGCTATTGATGCAGCTGTGTGTATATTATTATTTATCATCTGGTTAGTAATATGTCGTGGTATATCCTGCATTCGATAGAATTCAAACTTCTTGTGTGACTCTGAATTTGAATCACTATCATATTGGAACTTGAGATTTTCCATGCATGGTCTGATCTGATCAGCAACAGAAATTAGTTTCTTCGATGGGGCATGTAGATTGAAGTTACAAACCGGTCATGTTGATTAGATCTTTAGTGCTATTTGCAGGCACGTGCTTCTTGTCACCCATATATAGGCATTTTACTTTATAAAGTCTACTGTACAGTTTCATTACTCTTAGACATCTGTACTTGTATATGAATTTTGGGAAGATTTTAAAGGTTCTTGATTCACCTGTTTCTATAGTTTTTTTTAAGTAGATAATTATTTTCTAATATAGAGATGACCAATATTCTCAAATCTCAAGTTGTATATGCAGAATAATTATGCCACCGAAATT
Coding sequences of Glyma.06g322700
>Glyma.06g322700.1 sequence-type=CDS polypeptide=Glyma.06g322700.1.p locus=Glyma.06g322700 ID=Glyma.06g322700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCATGTATGTGTATAGTGGTGGAGACCAAGAAGATGAGAATGTCGCAGCCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGGACTTTTGGTTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTTTTGGTAACCCGGTTGTTCTTCAGTTTCTGGAGCATGTTAGAGACGAGTTTAAAAAGCTGTCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATCCGCGGCCTGATCACTTCATTGGAGAGTGTTTCACATGGTAGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCGTCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCGTTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTGATTGCTATGAGAGACGTTGAGTTGGAGGAGCATCGGAAATCTACAGATAGAGGAGCAAGGGTCGATTCAGGCAATCTGGATGGTGTAAGCCAAGGTGGTGCAGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTCCTAGCTATTGATGCAGCTGTGTGTATATTATTATTTATCATCTGGTTAGTAATATGTCGTGGTATATCCTGCATTCGATAG

>Glyma.06g322700.2 sequence-type=CDS polypeptide=Glyma.06g322700.2.p locus=Glyma.06g322700 ID=Glyma.06g322700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCATGTATGTGTATAGTGGTGGAGACCAAGAAGATGAGAATGTCGCAGCCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGGACTTTTGGTTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTTTTGGTAACCCGGTTGTTCTTCAGTTTCTGGAGCATGTTAGAGACGAGTTTAAAAAGCTGTCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATCCGCGGCCTGATCACTTCATTGGAGAGTGTTTCACATGGTAGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCGTCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCGTTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTGATTGCTATGAGAGACGTTGAGTTGGAGGAGCATCGGAAATCTACAGATAGAGGAGCAAGGGTCGATTCAGGCAATCTGGATGGTGTAAGCCAAGGTGGTGCAGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTCCTAGCTATTGATGCAGCTGTGTGTATATTATTATTTATCATCTGGTTAGTAATATGTCGTGGTATATCCTGCATTCGATAG
Predicted protein sequences of Glyma.06g322700
>Glyma.06g322700.1.p sequence-type=predicted peptide transcript=Glyma.06g322700.1 locus=Glyma.06g322700 ID=Glyma.06g322700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSIQNKVYYCCVSKGNNVMYVYSGGDQEDENVAALCLERAPPFHRWYFETIGKRTFGFFMEDGYVYFTIVDKGFGNPVVLQFLEHVRDEFKKLSRKGSRGILPNMNSIYIQEKLVPVIRGLITSLESVSHGSSNWRDETSLSFQVDLSPSPSNLNGQIEGASSTKAPLLGKSNKPDKKKVKDHVIAMRDVELEEHRKSTDRGARVDSGNLDGVSQGGAGASVSLQKDMGSMRMRSAPQNIRKKWWRQVRIVLAIDAAVCILLFIIWLVICRGISCIR*

>Glyma.06g322700.2.p sequence-type=predicted peptide transcript=Glyma.06g322700.2 locus=Glyma.06g322700 ID=Glyma.06g322700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSIQNKVYYCCVSKGNNVMYVYSGGDQEDENVAALCLERAPPFHRWYFETIGKRTFGFFMEDGYVYFTIVDKGFGNPVVLQFLEHVRDEFKKLSRKGSRGILPNMNSIYIQEKLVPVIRGLITSLESVSHGSSNWRDETSLSFQVDLSPSPSNLNGQIEGASSTKAPLLGKSNKPDKKKVKDHVIAMRDVELEEHRKSTDRGARVDSGNLDGVSQGGAGASVSLQKDMGSMRMRSAPQNIRKKWWRQVRIVLAIDAAVCILLFIIWLVICRGISCIR*






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