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Report for Sequence Feature Glyma.06g322300

Feature Type:gene_model
Chromosome:Gm06
Start:51058001
stop:51065788
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g322300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56140.1AT RNA-binding KH domain-containing protein JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG1588 KOG RNA-binding protein Sam68 and related KH domain proteins JGI N/AIEA
PTHR11208Panther RNA-BINDING PROTEIN RELATED JGI N/AIEA
PTHR11208:SF25Panther JGI N/AIEA

Expression Patterns of Glyma.06g322300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g322300
ParalogEvidenceComments
Glyma.04g111900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g322300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g48070 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g322300
>Glyma.06g322300.1 sequence-type=CDS polypeptide=Glyma.06g322300.1.p locus=Glyma.06g322300 ID=Glyma.06g322300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGTCATCTTCCGGCGCCGCCAGGTACATGGCTTTTCCACCCTCGCCCTCCGCGCCTCCGTCGCCGCACCTCTCCGGTGCTCTTCGCTCCACTCCCCTCTCCGACCCGGACAAATATCTTACTGAATTGTTGGGAGAACGTAACAAGCTTAGTCCCTTCATGGCGGTCCTTCCCCACTGCTTTCGATTGTTAAACCAAGAAATTTTGCGTGTAACCACGCTGATGGGGAATGCATCAGTTTTAGGTCAAAGTGGGCTTGAACATGCTAGCCCCCTGGCTACCGGTGGAATATTTTCAAATGGAGGTGCCGATGTGAACGGATGGGCATCACGATTTCAATCAGAAAGACCTAGCTTGTTACAGTCCTCTTCAACACAAAGCTGGCTGAGTCCACAAGGTAGCTCATCTGGTATTATTGTTAAAAAGACGGTCAGAGTAGATATTCCTGTGGACGCATATCCTAATTTTAACTTTGTTGGTCGCCTCCTAGGCCCTAGAGGAAATTCTCTAAAGCGTGTAGAAGCAAGTACCGAGTGTCGTGTCTTGATCAGGGGCCGAGGTAGCATTAAGGATCCAGCTAGGGAGGAAATGATGAGAGGGAAACCTGGGTATGAACATCTGAATGAACCTCTCCACATTCTAGTTGAGGCAGAATTACCTGTTGAAATAGTAGATGCTCGTTTGATGCAAGCACGTGACATACTTGAAGATTTGCTCAAACCGGTGGATGAATCTCAGGATTTCTACAAGAAGCAGCAACTTCGGGAGTTAGCAATGCTGAATGGCACTCTTCGCGAGGAGGGTTCTCCCATGTCTGGTTCTGTTTCACCCTTCCACAACAGCCTTGGTATGAAGAGGGCCAAGACCAGGGGGTAA
Predicted protein sequences of Glyma.06g322300
>Glyma.06g322300.1.p sequence-type=predicted peptide transcript=Glyma.06g322300.1 locus=Glyma.06g322300 ID=Glyma.06g322300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMSSSGAARYMAFPPSPSAPPSPHLSGALRSTPLSDPDKYLTELLGERNKLSPFMAVLPHCFRLLNQEILRVTTLMGNASVLGQSGLEHASPLATGGIFSNGGADVNGWASRFQSERPSLLQSSSTQSWLSPQGSSSGIIVKKTVRVDIPVDAYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQARDILEDLLKPVDESQDFYKKQQLRELAMLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG*






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