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Report for Sequence Feature Glyma.06g320400

Feature Type:gene_model
Chromosome:Gm06
Start:50905026
stop:50911059
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g320400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56280.1AT COP9 signalosome subunit 6A JGI N/AIEA
GO:0000338GO-bp protein deneddylation EnsemblGenomesN/AIEA
GO:0008180GO-cc COP9 signalosome EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG3050 KOG COP9 signalosome, subunit CSN6 JGI N/AIEA
PTHR10540Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED JGI N/AIEA
PF01398PFAM JAB1/Mov34/MPN/PAD-1 ubiquitin protease JGI N/AIEA

Expression Patterns of Glyma.06g320400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g320400
ParalogEvidenceComments
Glyma.04g115900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g320400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g47850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g320400
>Glyma.06g320400.1 sequence-type=CDS polypeptide=Glyma.06g320400.1.p locus=Glyma.06g320400 ID=Glyma.06g320400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCTTCATCGAGTAGCGGATTGACGTTCAAGCTGCACCCTCTGGTGATCGTGAACATCTCCGACCACTACACCAGGGTCAAGTCTCAGATGAACCCAACCCACGCGCCACCGCACACCACCACCAACAACAACAACGCCAACGGCGGCGACGGCGTCGTTTCGCCGCCGCTCCACCCGCGGGTCTATGGTTGCGTCATAGGGGTCCAGAAGGGTCGCACCGTTGAGATCTTCAACAGCTTCGAACTCCTCTACGATCCTTCCACCCACTCCCTCGATCGCACCTTTCTCGAGAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAACCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTGAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGTTATACTATTGAGACTGTTGAAGCAGAACGGATATCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCTGCTACACAATTGGCTGCTCACCTTACTGGTACACACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACACCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTCTTGATGGAGTACAATGACACCGTATTGATTAGTTACCTGGCAATGCTGACCAACTGTTCAAGCTCAATGAATGAGCTGGTGGACAAATTTAATATCGCGTACGATAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGTGA
Predicted protein sequences of Glyma.06g320400
>Glyma.06g320400.1.p sequence-type=predicted peptide transcript=Glyma.06g320400.1 locus=Glyma.06g320400 ID=Glyma.06g320400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTHAPPHTTTNNNNANGGDGVVSPPLHPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGTHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTVLISYLAMLTNCSSSMNELVDKFNIAYDRHSRRGGRTAFM*






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