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Report for Sequence Feature Glyma.06g320200

Feature Type:gene_model
Chromosome:Gm06
Start:50893586
stop:50898694
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g320200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G17390.1AT ankyrin repeat-containing 2B JGI N/AIEA
GO:0045036GO-bp protein targeting to chloroplast EnsemblGenomesN/AIEA
GO:0031359GO-cc integral component of chloroplast outer membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0030941GO-mf chloroplast targeting sequence binding EnsemblGenomesN/AIEA
KOG4214 KOG Myotrophin and similar proteins JGI N/AIEA
PTHR24193Panther ANKYRIN REPEAT PROTEIN JGI N/AIEA
PF00023PFAM Ankyrin repeat JGI N/AIEA

Expression Patterns of Glyma.06g320200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g320200
ParalogEvidenceComments
Glyma.04g116500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g320200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g47830 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g320200
>Glyma.06g320200.2 sequence-type=transcript locus=Glyma.06g320200 ID=Glyma.06g320200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGATATAATAGGGAGCCATTCATTTGAAAGGATGGGGATTGAGGGGGCCCACACCTATCACTATTCTATCATCTCATCGGTGGAGATTTCTATCGCTAATTAAATTAAATTAAAAAAAAAGGGTTTTGTTTTCATCCAAACTCTCACACTGCCTCTTCCTCTCAGATTCAGCAATTTTCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCATCTAAAGATTCTCCAGCAGAACAAAGAGCGACAGCTACTTTTGGACCTAGACCTGGACCTGCTGGGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTCAATCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAAGATGCTATCCCTAGCTTCGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCGTCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGGCACGCATCAAAGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACCGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCTCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAAAGGAATGTGTGGCCCTTCTCCTTGAAAATGGTGCTGCAGTTACTCTCCAGAATATGGATGGTAAAACTCCAATCGATGTTGCGAAGCTAAACAATCAAAATGAAGTCCTAAAGCTACTTGAGAAAGATGCTTTTCTGTAGTTGTAATGCATGATGCCATGCTGTCACCAACAAGCAAAGGGGGAAACTGAGGGGAAGAAGGCATGGTGACTTCGTTATTTTCTCTTTTGGTTTCTTCCAGCCATTTAGTGTGTTAAACTAAATTGATTAGCGTTGTTGGATGAGTTACCATAGAATTTGTTATCTATGGTCTTGTAATGCATTTATTGTTACACTGCATGATTTTGAAGATTAGTGCCGTCATGATTTTATTAATGTTTCAATTTTACTTATAATACATTGCTTCGTGGGCAAATTCTGGTTCAAATGATATTGTACAAGAAAATAAGGCGAGTCAAAAGCTGAAAAGGTTTTGGAAGATTTTGATCTAGGGGACT

>Glyma.06g320200.3 sequence-type=transcript locus=Glyma.06g320200 ID=Glyma.06g320200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCTCTCGCCGTCTAGCAATTTTCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCATCTAAAGATTCTCCAGCAGAACAAAGAGCGACAGCTACTTTTGGACCTAGACCTGGACCTGCTGGGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTCAATCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAAGATGCTATCCCTAGCTTCGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCGTCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGGCACGCATCAAAGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACCGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCTCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAAAGGAATGTGTGGCCCTTCTCCTTGAAAATGGTGCTGCAGTTACTCTCCAGAATATGGATGGTAAAACTCCAATCGATGTTGCGAAGCTAAACAATCAAAATGAAGTCCTAAAGCTACTTGAGAAAGATGCTTTTCTGTAGTTGTAATGCATGATGCCATGCTGTCACCAACAAGCAAAGGGGGAAACTGAGGGGAAGAAGGCATGGTGACTTCGTTATTTTCTCTTTTGGTTTCTTCCAGCCATTTAGTGTGTTAAACTAAATTGATTAGCGTTGTTGGATGAGTTACCATAGAATTTGTTATCTATGGTCTTGTAATGCATTTATTGTTACACTGCATGATTTTGAAGATTAGTGCCGTCATGATTTTATTAATGTTTCAATTTTACTTATAATACATTGCTTCGTGGGCAAATTCTGGTTCAAATGATATTGTACAAGAAAATAAGGCGAGTCAAAAGCTGAAAAGGTTTTGGAAGATTTTGATCTAGGGGACT
Coding sequences of Glyma.06g320200
>Glyma.06g320200.1 sequence-type=CDS polypeptide=Glyma.06g320200.1.p locus=Glyma.06g320200 ID=Glyma.06g320200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCATCTAAAGATTCTCCAGCAGAACAAAGAGCGACAGCTACTTTTGGACCTAGACCTGGACCTGCTGGGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTCAATCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAAGATGCTATCCCTAGCTTCGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCGTCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGGCACGCATCAAAGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACCGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCTCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAAAGGAATGTGTGGCCCTTCTCCTTGAAAATGGTGCTGCAGTTACTCTCCAGAATATGGATGGTAAAACTCCAATCGATGTTGCGAAGCTAAACAATCAAAATGAAGTCCTAAAGCTACTTGAGAAAGATGCTTTTCTGTAG

>Glyma.06g320200.2 sequence-type=CDS polypeptide=Glyma.06g320200.2.p locus=Glyma.06g320200 ID=Glyma.06g320200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCATCTAAAGATTCTCCAGCAGAACAAAGAGCGACAGCTACTTTTGGACCTAGACCTGGACCTGCTGGGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTCAATCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAAGATGCTATCCCTAGCTTCGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCGTCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGGCACGCATCAAAGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACCGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCTCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAAAGGAATGTGTGGCCCTTCTCCTTGAAAATGGTGCTGCAGTTACTCTCCAGAATATGGATGGTAAAACTCCAATCGATGTTGCGAAGCTAAACAATCAAAATGAAGTCCTAAAGCTACTTGAGAAAGATGCTTTTCTGTAG

>Glyma.06g320200.3 sequence-type=CDS polypeptide=Glyma.06g320200.3.p locus=Glyma.06g320200 ID=Glyma.06g320200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCATCTAAAGATTCTCCAGCAGAACAAAGAGCGACAGCTACTTTTGGACCTAGACCTGGACCTGCTGGGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTCAATCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAAGATGCTATCCCTAGCTTCGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCGTCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGGCACGCATCAAAGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGCGGTCCTGCTGCTATGATGAGGTACTGGAATAATGAGGAGGTTTTGCAGAAGTTGGGACAAGCCATGGGTCTTGCCAATTCGGGAGATGCAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACCGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCTCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGCGAGGTAAAATGTGCTCAAGTTCTCCTCGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAAAGGAATGTGTGGCCCTTCTCCTTGAAAATGGTGCTGCAGTTACTCTCCAGAATATGGATGGTAAAACTCCAATCGATGTTGCGAAGCTAAACAATCAAAATGAAGTCCTAAAGCTACTTGAGAAAGATGCTTTTCTGTAG
Predicted protein sequences of Glyma.06g320200
>Glyma.06g320200.1.p sequence-type=predicted peptide transcript=Glyma.06g320200.1 locus=Glyma.06g320200 ID=Glyma.06g320200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASDSKKDFPADDKAGTEESKTSKDETSSKDSPAEQRATATFGPRPGPAGHPGNPFDLSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGAPQDAIPSFDNQQYFSTMQQVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMARIKEDPSLKHILEEIETGGPAAMMRYWNNEEVLQKLGQAMGLANSGDAGASAENSGADETEDLGNEDESIVHHTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGAKVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVLKLLEKDAFL*

>Glyma.06g320200.2.p sequence-type=predicted peptide transcript=Glyma.06g320200.2 locus=Glyma.06g320200 ID=Glyma.06g320200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASDSKKDFPADDKAGTEESKTSKDETSSKDSPAEQRATATFGPRPGPAGHPGNPFDLSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGAPQDAIPSFDNQQYFSTMQQVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMARIKEDPSLKHILEEIETGGPAAMMRYWNNEEVLQKLGQAMGLANSGDAGASAENSGADETEDLGNEDESIVHHTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGAKVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVLKLLEKDAFL*

>Glyma.06g320200.3.p sequence-type=predicted peptide transcript=Glyma.06g320200.3 locus=Glyma.06g320200 ID=Glyma.06g320200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASDSKKDFPADDKAGTEESKTSKDETSSKDSPAEQRATATFGPRPGPAGHPGNPFDLSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGAPQDAIPSFDNQQYFSTMQQVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMARIKEDPSLKHILEEIETGGPAAMMRYWNNEEVLQKLGQAMGLANSGDAGASAENSGADETEDLGNEDESIVHHTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGAKVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVLKLLEKDAFL*






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