Glyma.06g318900

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g318900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	50757688
stop:	50763325
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g318900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12260.1	AT	NAC 007	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
PF02365	PFAM	No apical meristem (NAM) protein	JGI	N/A	IEA

Proteins Associated with Glyma.06g318900

Locus	Gene Symbol	Protein Name
	NAC045	NAC Transcription Factor gene 45

Expression Patterns of Glyma.06g318900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g318900

Paralog	Evidence	Comments
Glyma.04g119500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g318900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g47680	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g318900

Limit To All Plant Sequences

>Glyma.06g318900.2 sequence-type=transcript locus=Glyma.06g318900 ID=Glyma.06g318900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
aGACCCTTTTGAGAGAGTTTAATTTCATTTGTTGCATTCTTCACTCTTTGTTAATTCGAATTGTGTCTCTATCGGTTGCTGGTAGAGTTGGCACTATAGAGACACTCATTTCCTTTCCTTACTTTTCTTCTTATTAGTCTGGCATTTTTCCCCTCAGAAATGAAGCTTCCCCACCAATTCAGCTCTCCCTGACAGTGAGATCTATCTGATCTCATCACATAATTTCTATTCTTTGCGAGAAAACAAAGAGATCGATCGTATCGAATCGTCTTCCGAGAGAAGAAGAAAGAACTATATATCATTCATTTGCTTTTTTCTTTTCTTTCCCTTCTTATTTAACCCCACTTCCCTTGTTCCACCCTTTTCTACTTCCACTCTTCTTCTTCCTCACCTTTCTTTTGCCTCTTTCTCTCTCAAGAACCACGTGTCAGGTTGTTTCTGTTCTATGTTTATAAGTAACTTGGGTTCCTTCGTTCTCTTATCTTTTTGCATTGATTTTTTGTGTCTGATTTGGTCAAATTGAGAGGTAAATATACTTGTTTAGTTAACTTGCATCATATCTCAGTGTCATAGACCAATTCATCATTTTTCTGAGACATTAAGGGATTTTAATTTTCATCTTTGGTGGAAGATTTGTGACTGCACCACCTTGATCTGTGGCTTCCAAGAGAGAAAGAGCTCAGAAGAGAGAGGGAGAATATGAATAATTTTTCCCATGTTCCCCCTGGTTTTAGATTCCACCCTACTGACGAAGAACTTGTTGATTACTACCTAAGGAAGAAAGTTACCTCAAGAGGGATTGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAGCACAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAGGCAACTGGAAGAGACAAAGCAATCTACTCAAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCGCACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTGCCCTACCAGCAGTTCCAATATTCTTGCAAGAAAGAGTTGGATTTGTCATACCATTTACCTGTCCAGCTTCCATTGGAGAACCAAAAATTGCTCCAATCTGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCATCAATGATGCAACAAGTTCAACAACAAAATTTTCAGGCTGTAGTGTTTGGAAACAATGCCAATGATCAACAAGTGACTGATTGGAGATCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGATCACAATAGATACTCAAACACAGGCAACATTTTTCAAGTGAAGAACAATAGCAATATTGAACAGTTGAGGGACTTGGACAAGGATGAAATGATGCCTGAAAATGCCTCAACATCGAACTCAAGCTGTCCAATTAACATGTGGAAATAGTGGCTCTGCTTAAATTGATTTTGGGTTTAAACTAATAATAGGGGTACTTCAATTAGTTAATACTAAAATAATGAAAATACCGTATAATTTCTTGTACATAATAAATGAAATGAACATGACATTAAAGCTAGTACATGTGAATTCTCTGGCTTCACTTCTAGCTAGCTGTTAGCTAGCATTAAGTTAAAATTTATTCAAATAGAAAAATAATTAGTAGAATGTGATCATATGTCCCATAAGAGATAAAGCTTGCAGGATTTGTAGTTATTGTGTCATTTGTGTGGTTTAAAGTGATGGGCTCTAGCCACTCCA

>Glyma.06g318900.3 sequence-type=transcript locus=Glyma.06g318900 ID=Glyma.06g318900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
aGACCCTTTTGAGAGAGTTTAATTTCATTTGTTGCATTCTTCACTCTTTGTTAATTCGAATTGTGTCTCTATCGGTTGCTGGTAGAGTTGGCACTATAGAGACACTCATTTCCTTTCCTTACTTTTCTTCTTATTAGTCTGGCATTTTTCCCCTCAGAAATGAAGCTTCCCCACCAATTCAGCTCTCCCTGACAGTGAGATCTATCTGATCTCATCACATAATTTCTATTCTTTGCGAGAAAACAAAGAGATCGATCGTATCGAATCGTCTTCCGAGAGAAGAAGAAAGAACTATATATCATTCATTTGCTTTTTTCTTTTCTTTCCCTTCTTATTTAACCCCACTTCCCTTGTTCCACCCTTTTCTACTTCCACTCTTCTTCTTCCTCACCTTTCTTTTGCCTCTTTCTCTCTCAAGAACCACGTGTCAGGTTGTTTCTGTTCTATGTTTATAAGTAACTTGGGTTCCTTCGTTCTCTTATCTTTTTGCATTGATTTTTTGTGTCTGATTTGGTCAAATTGAGAGATTTGTGACTGCACCACCTTGATCTGTGGCTTCCAAGAGAGAAAGAGCTCAGAAGAGAGAGGGAGAATATGAATAATTTTTCCCATGTTCCCCCTGGTTTTAGATTCCACCCTACTGACGAAGAACTTGTTGATTACTACCTAAGGAAGAAAGTTACCTCAAGAGGGATTGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAGCACAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAGGCAACTGGAAGAGACAAAGCAATCTACTCAAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCGCACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTGCCCTACCAGCAGTTCCAATATTCTTGCAAGAAAGAGTTGGATTTGTCATACCATTTACCTGTCCAGCTTCCATTGGAGAACCAAAAATTGCTCCAATCTGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCATCAATGATGCAACAAGTTCAACAACAAAATTTTCAGGCTGTAGTGTTTGGAAACAATGCCAATGATCAACAAGTGACTGATTGGAGATCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGATCACAATAGATACTCAAACACAGGCAACATTTTTCAAGTGAAGAACAATAGCAATATTGAACAGTTGAGGGACTTGGACAAGGATGAAATGATGCCTGAAAATGCCTCAACATCGAACTCAAGCTGTCCAATTAACATGTGGAAATAGTGGCTCTGCTTAAATTGATTTTGGGTTTAAACTAATAATAGGGGTACTTCAATTAGTTAATACTAAAATAATGAAAATACCGTATAATTTCTTGTACATAATAAATGAAATGAACATGACATTAAAGCTAGTACATGTGAATTCTCTGGCTTCACTTCTAGCTAGCTGTTAGCTAGCATTAAGTTAAAATTTATTCAAATAGAAAAATAATTAGTAGAATGTGATCATATGTCCCATAAGAGATAAAGCTTGCAGGATTTGTAGTTATTGTGTCATTTGTGTGGTTTAAAGTGATGGGCT

Coding sequences of Glyma.06g318900

Limit To All Plant Sequences

>Glyma.06g318900.1 sequence-type=CDS polypeptide=Glyma.06g318900.1.p locus=Glyma.06g318900 ID=Glyma.06g318900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTATCTTATATCTATACGTACTCTATACACGCAGAGCTCAGAAGAGAGAGGGAGAATATGAATAATTTTTCCCATGTTCCCCCTGGTTTTAGATTCCACCCTACTGACGAAGAACTTGTTGATTACTACCTAAGGAAGAAAGTTACCTCAAGAGGGATTGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAGCACAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAGGCAACTGGAAGAGACAAAGCAATCTACTCAAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCGCACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTGCCCTACCAGCAGTTCCAATATTCTTGCAAGAAAGAGTTGGATTTGTCATACCATTTACCTGTCCAGCTTCCATTGGAGAACCAAAAATTGCTCCAATCTGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCATCAATGATGCAACAAGTTCAACAACAAAATTTTCAGGCTGTAGTGTTTGGAAACAATGCCAATGATCAACAAGTGACTGATTGGAGATCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGATCACAATAGATACTCAAACACAGGCAACATTTTTCAAGTGAAGAACAATAGCAATATTGAACAGTTGAGGGACTTGGACAAGGATGAAATGATGCCTGAAAATGCCTCAACATCGAACTCAAGCTGTCCAATTAACATGTGGAAATAG

>Glyma.06g318900.2 sequence-type=CDS polypeptide=Glyma.06g318900.2.p locus=Glyma.06g318900 ID=Glyma.06g318900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATAATTTTTCCCATGTTCCCCCTGGTTTTAGATTCCACCCTACTGACGAAGAACTTGTTGATTACTACCTAAGGAAGAAAGTTACCTCAAGAGGGATTGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAGCACAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAGGCAACTGGAAGAGACAAAGCAATCTACTCAAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCGCACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTGCCCTACCAGCAGTTCCAATATTCTTGCAAGAAAGAGTTGGATTTGTCATACCATTTACCTGTCCAGCTTCCATTGGAGAACCAAAAATTGCTCCAATCTGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCATCAATGATGCAACAAGTTCAACAACAAAATTTTCAGGCTGTAGTGTTTGGAAACAATGCCAATGATCAACAAGTGACTGATTGGAGATCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGATCACAATAGATACTCAAACACAGGCAACATTTTTCAAGTGAAGAACAATAGCAATATTGAACAGTTGAGGGACTTGGACAAGGATGAAATGATGCCTGAAAATGCCTCAACATCGAACTCAAGCTGTCCAATTAACATGTGGAAATAG

>Glyma.06g318900.3 sequence-type=CDS polypeptide=Glyma.06g318900.3.p locus=Glyma.06g318900 ID=Glyma.06g318900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATAATTTTTCCCATGTTCCCCCTGGTTTTAGATTCCACCCTACTGACGAAGAACTTGTTGATTACTACCTAAGGAAGAAAGTTACCTCAAGAGGGATTGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAGCACAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAGGCAACTGGAAGAGACAAAGCAATCTACTCAAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCGCACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTGCCCTACCAGCAGTTCCAATATTCTTGCAAGAAAGAGTTGGATTTGTCATACCATTTACCTGTCCAGCTTCCATTGGAGAACCAAAAATTGCTCCAATCTGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCATCAATGATGCAACAAGTTCAACAACAAAATTTTCAGGCTGTAGTGTTTGGAAACAATGCCAATGATCAACAAGTGACTGATTGGAGATCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGATCACAATAGATACTCAAACACAGGCAACATTTTTCAAGTGAAGAACAATAGCAATATTGAACAGTTGAGGGACTTGGACAAGGATGAAATGATGCCTGAAAATGCCTCAACATCGAACTCAAGCTGTCCAATTAACATGTGGAAATAG

Predicted protein sequences of Glyma.06g318900

Limit To All Plant Sequences

>Glyma.06g318900.1.p sequence-type=predicted peptide transcript=Glyma.06g318900.1 locus=Glyma.06g318900 ID=Glyma.06g318900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSYIYTYSIHAELRRERENMNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRGIDLDVIKDVDLYKIEPWDLQELCRIGAQEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGAPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSPKQSSQPNLPYQQFQYSCKKELDLSYHLPVQLPLENQKLLQSASNSMTPYGIEENPNAMQPASSMMQQVQQQNFQAVVFGNNANDQQVTDWRSLDKYVASQLSQEDASKDHNRYSNTGNIFQVKNNSNIEQLRDLDKDEMMPENASTSNSSCPINMWK*

>Glyma.06g318900.2.p sequence-type=predicted peptide transcript=Glyma.06g318900.2 locus=Glyma.06g318900 ID=Glyma.06g318900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRGIDLDVIKDVDLYKIEPWDLQELCRIGAQEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGAPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSPKQSSQPNLPYQQFQYSCKKELDLSYHLPVQLPLENQKLLQSASNSMTPYGIEENPNAMQPASSMMQQVQQQNFQAVVFGNNANDQQVTDWRSLDKYVASQLSQEDASKDHNRYSNTGNIFQVKNNSNIEQLRDLDKDEMMPENASTSNSSCPINMWK*

>Glyma.06g318900.3.p sequence-type=predicted peptide transcript=Glyma.06g318900.3 locus=Glyma.06g318900 ID=Glyma.06g318900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRGIDLDVIKDVDLYKIEPWDLQELCRIGAQEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGAPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSPKQSSQPNLPYQQFQYSCKKELDLSYHLPVQLPLENQKLLQSASNSMTPYGIEENPNAMQPASSMMQQVQQQNFQAVVFGNNANDQQVTDWRSLDKYVASQLSQEDASKDHNRYSNTGNIFQVKNNSNIEQLRDLDKDEMMPENASTSNSSCPINMWK*

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