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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38660.1 | AT | Amino acid dehydrogenase family protein | JGI | N/A | IEA |
| GO:0006730 | GO-bp | one-carbon metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009396 | GO-bp | folic acid-containing compound biosynthetic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004477 | GO-mf | methenyltetrahydrofolate cyclohydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0004488 | GO-mf | methylenetetrahydrofolate dehydrogenase (NADP+) activity | EnsemblGenomes | N/A | IEA |
| GO:0004488 | GO-mf | methylenetetrahydrofolate dehydrogenase (NADP+) activity | JGI | N/A | IEA |
| KOG0089 | KOG | Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase | JGI | N/A | IEA |
| PTHR10025 | Panther | TETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE FAMILY MEMBER | JGI | N/A | IEA |
| PTHR10025:SF5 | Panther | BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF00763 | PFAM | Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain | JGI | N/A | IEA |
| PF02882 | PFAM | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain | JGI | N/A | IEA |
| PWY-3841 | SoyCyc9 | folate transformations II | Plant Metabolic Network | ISS | |
| PWY-6613 | SoyCyc9 | tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate | Plant Metabolic Network | ISS | |
| PWY-7909 | SoyCyc9 | formaldehyde oxidation VII (THF pathway) | Plant Metabolic Network | ISS | |
| GN7V-53150 | SoyCyc9-rxn | methenyltetrahydrofolate cyclohydrolase | Plant Metabolic Network | ISS |
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Glyma.06g315600 not represented in the dataset |
Glyma.06g315600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g18560 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g315600.1 sequence-type=CDS polypeptide=Glyma.06g315600.1.p locus=Glyma.06g315600 ID=Glyma.06g315600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGAGGTTGTGCCACTGATGGGGTGGTGGCATGGCACAGAACACTGAGAAAAGCATTTCATTCCTTTTGTTCTCCAACTTCTTGTATTTTTGGCCCCAACCTCCCTGATGTTTGGGTTCCCAGAGAGCACACACCCCCTCACACCCTTTTTCCAGAAAGTCTCCAATGGGCTAATAATGGTCACAATGCTTTGATTCTTGAGGGAAAACCAATTGCTAAACAGATAAAGCTTGAAGTGGCTGATGAGATAAGAAGGATGAAGAGTGGCATTGGGAAGTTTCCTAGACTGGCTGTGGTTTTGGTGGGTGATAGGAGGGACTCTCACACTTTCATTCACATTAAGTTGAAGGCCTGTGATCAAGTTGGCATTGAAACAGTGACTTCCCAGTTGCCTGAAAACTGTGATGAAAGTGAACTGCTTGATGTTGTTTCCGGTTTCAATGAGGACCCGGATGTGCATGGCATTCTTGTGCAACTTCCTCTGCCTCAACATTTGGACGAGGAAAAAATTATCAATGTTGTGAGTCCTGAAAAGGATGTGGATGGCTTTCATCCCTTAAATATTGGAAATCTTGCAATAAGAGGAAGAAAGCCCTTCTTTGTTCCTTGTGCTCCCAAGGGCTGCATTGAGTTGTTACTTAGGCACGGTGTGGAAATCAAGGGGAAAAGAGCAGTGATAATTGGAAGAAGTAAAATTGTGGGGTTACCCACTTCCTTGCTATTGCAGAGGCACCACGCAACAGTCAGCGTGTTACACGCGTATACAAAGAACCCAGAACATATAACTTCTGAAGCAGATATTGTGGTAGTAGATGTTGGAGTCCCCAACATAGTTCGTGGCAATTGGCTAAAGAAAGGAGCTGTGGTGATTGACATGGGAACAAATCAAGTTAAGGATCCCAGCGGCCACGGCTTTTGTGTCTCGGGAGATGTTTGCTTTGAAGAGGCGGTTAAGGTGGCATCAGCCATTACCCCTGTTCCTGGAGGCGTGGGACCGGTTACAATATCGATGCTCCTCTCCAACACCCTTGATTCTGCGAAACGTGCTTTTGGAATGGTTTGA
>Glyma.06g315600.1.p sequence-type=predicted peptide transcript=Glyma.06g315600.1 locus=Glyma.06g315600 ID=Glyma.06g315600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRGCATDGVVAWHRTLRKAFHSFCSPTSCIFGPNLPDVWVPREHTPPHTLFPESLQWANNGHNALILEGKPIAKQIKLEVADEIRRMKSGIGKFPRLAVVLVGDRRDSHTFIHIKLKACDQVGIETVTSQLPENCDESELLDVVSGFNEDPDVHGILVQLPLPQHLDEEKIINVVSPEKDVDGFHPLNIGNLAIRGRKPFFVPCAPKGCIELLLRHGVEIKGKRAVIIGRSKIVGLPTSLLLQRHHATVSVLHAYTKNPEHITSEADIVVVDVGVPNIVRGNWLKKGAVVIDMGTNQVKDPSGHGFCVSGDVCFEEAVKVASAITPVPGGVGPVTISMLLSNTLDSAKRAFGMV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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