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Report for Sequence Feature Glyma.06g310400

Feature Type:gene_model
Chromosome:Gm06
Start:49880338
stop:49884322
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g310400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44580.1AT zinc ion binding JGI N/AIEA
GO:0006275GO-bp regulation of DNA replication EnsemblGenomesN/AIEA
GO:0007064GO-bp mitotic sister chromatid cohesion EnsemblGenomesN/AIEA
GO:0034088GO-bp maintenance of mitotic sister chromatid cohesion EnsemblGenomesN/AIEA
GO:0000775GO-cc chromosome, centromeric region EnsemblGenomesN/AIEA
GO:0000785GO-cc chromatin EnsemblGenomesN/AIEA
GO:0005654GO-cc nucleoplasm EnsemblGenomesN/AIEA
GO:0031390GO-cc Ctf18 RFC-like complex EnsemblGenomesN/AIEA
GO:0003689GO-mf DNA clamp loader activity EnsemblGenomesN/AIEA
KOG0798 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR13395Panther SISTER CHROMATID COHESION PROTEIN DCC1-RELATED JGI N/AIEA
PTHR13395:SF6Panther SISTER CHROMATID COHESION PROTEIN DCC1 JGI N/AIEA
PF09724PFAM Uncharacterized conserved protein (DUF2036) JGI N/AIEA

Expression Patterns of Glyma.06g310400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g310400
ParalogEvidenceComments
Glyma.04g128400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g310400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g46710 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g310400
>Glyma.06g310400.2 sequence-type=transcript locus=Glyma.06g310400 ID=Glyma.06g310400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAAATATCAGCCCATTTTGGGCGGGAAGGGTTACCCTCTTCTCTCCAGTCCGAAGAGTCGCATTCGAATTGCAAGAAATCAAAGAAGAACTAATCAATAACACGAATAATTCAAGTGAGAGGGAGAAATGGAATTGCCTCCGCAGTCGGGTTCAATAGGGGCAGAAGCACTAAAACATATAGCTCCTGGATCATCAATTTCTGTTGCATATCACTCATCTTTTGGACCATATGAAGACCTCCTCTTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGAATGAAAGGGTGGTCTTGAGAGGACAGCCTGACGAAGATGCAGTTCTTTGTACTCAATCCAAGACATACGCTATGAAGTTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCACCTGCAAATCATTCAGAATATTATGAAAATCAACTAAAGAATGATAGTAATAGTGATGAAGAGAAAGTTGTTGCACCTGTACTCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGACAGCCCCCAGACTTGATAAGCTTAAATCACTTCTGTCAGAAAAACCTTACAAATTGGAGGAGGATGACATGGGAAATTTAGAAGAGAATCAGGAATCTAGAATAGGATTATATAACTGGAATGATCTAGTAGACAATATTCAAGCTAGTGATGAGGAATTATTGTCCGGACTGCAGGCTCTTTCGGCACTGGAGATTTATGGGTATTGGAGATTAGTTGACGGGAGTTACATGGACATGATTCTGGGAATGATTTTGAAAAATGCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTACACTGGAATCAGATGGATTTCCTGGGGTGCTTGCTAGGCATTGTTTGAATGTATATGGTAACAGAGTAAATGAGTGCATGCCTAGCTTTGTCTGGAAGTTGGATGAGAAGCGAGTATGCATACATTTTGCAAGAGACATCCTAAAAGGGGGTAAGAGGAAGTTAGAGAGTTTCATGGATGAATGGAGGCAGAAGATTCCAGACGGAATGCAGCCCACTTTTGATCTTGTGGAAGGAGAGGTATTAACAGAGAAAATTGGAGTTGAAACATGGGTCCACGCCTTCAGTGTCGCTTCTTTGCCTTCCACTCCAGCTGAGCGTTTCTCTATTCTTTTCAGAGAGAGGCCAAAATGGGAATGGAAAGATCTTCAACCCTATATCAGAGATCTGAAGTTACCGGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAGGACACAACCATCAGCTGACGCAGAACCAGTTTTCAGTGCAAGATAGTATGTACTTGTGTATCTTCAACAGTCCTTATTTTCTTCTCCCTCACTTCAGATTGACAATGTCCAGTACTTCTATGTTACAGTTTAGAATTTCTTGTATTTCCACTATATGCGTGTGTGTAAAATTAAGATTCGTTATATTACTAGAAATAACTTTTGTGGTGATAAGCTTTGTGTATTCCCTTCCATGTTTGGAAATTACTGATCTCTTTTAAAATGTAGATCTACCAAAATCCTGAGACTAATTTACATGGCACCAAAACACTGTCACAAACAGGCTTTAGTGACAG
Coding sequences of Glyma.06g310400
>Glyma.06g310400.1 sequence-type=CDS polypeptide=Glyma.06g310400.1.p locus=Glyma.06g310400 ID=Glyma.06g310400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTGCCTCCGCAGTCGGGTTCAATAGGGGCAGAAGCACTAAAACATATAGCTCCTGGATCATCAATTTCTGTTGCATATCACTCATCTTTTGGACCATATGAAGACCTCCTCTTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGAATGAAAGGGTGGTCTTGAGAGGACAGCCTGACGAAGATGCAGTTCTTTGTACTCAATCCAAGACATACGCTATGAAGTTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCACCTGCAAATCATTCAGAATATTATGAAAATCAACTAAAGAATGATAGTAATAGTGATGAAGAGAAAGTTGTTGCACCTGTACTCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGACAGCCCCCAGACTTGATAAGCTTAAATCACTTCTGTCAGAAAAACCTTACAAATTGGAGGAGGATGACATGGGAAATTTAGAAGAGAATCAGGAATCTAGAATAGGATTATATAACTGGAATGATCTAGTAGACAATATTCAAGCTAGTGATGAGGAATTATTGTCCGGACTGCAGGCTCTTTCGGCACTGGAGATTTATGGGTATTGGAGATTAGTTGACGGGAGTTACATGGACATGATTCTGGGAATGATTTTGAAAAATGCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTACACTGGAATCAGATGGATTTCCTGGGGTGCTTGCTAGGCATTGTTTGAATGTATATGGTAACAGAGTAAATGAGTGCATGCCTAGCTTTGTCTGGAAGTTGGATGAGAAGCGAGTATGCATACATTTTGCAAGAGACATCCTAAAAGGGGGTAAGAGGAAGTTAGAGAGTTTCATGGATGAATGGAGGCAGAAGATTCCAGACGGAATGCAGCCCACTTTTGATCTTGTGGAAGGAGAGGTATTAACAGAGAAAATTGGAGTTGAAACATGGGTCCACGCCTTCAGTGTCGCTTCTTTGCCTTCCACTCCAGCTGAGCGTTTCTCTATTCTTTTCAGAGAGAGGCCAAAATGGGAATGGAAAGATCTTCAACCCTATATCAGAGATCTGAAGTTACCGGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAGGACACAACCATCAGCTGACGCAGAACCAGTTTTCAGTGCAAGATAG

>Glyma.06g310400.2 sequence-type=CDS polypeptide=Glyma.06g310400.2.p locus=Glyma.06g310400 ID=Glyma.06g310400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTGCCTCCGCAGTCGGGTTCAATAGGGGCAGAAGCACTAAAACATATAGCTCCTGGATCATCAATTTCTGTTGCATATCACTCATCTTTTGGACCATATGAAGACCTCCTCTTTCTAGAGCTTGATGAGAAACTTCTCCCAGATGTTCTGAATGAAAGGGTGGTCTTGAGAGGACAGCCTGACGAAGATGCAGTTCTTTGTACTCAATCCAAGACATACGCTATGAAGTTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCACCTGCAAATCATTCAGAATATTATGAAAATCAACTAAAGAATGATAGTAATAGTGATGAAGAGAAAGTTGTTGCACCTGTACTCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGACAGCCCCCAGACTTGATAAGCTTAAATCACTTCTGTCAGAAAAACCTTACAAATTGGAGGAGGATGACATGGGAAATTTAGAAGAGAATCAGGAATCTAGAATAGGATTATATAACTGGAATGATCTAGTAGACAATATTCAAGCTAGTGATGAGGAATTATTGTCCGGACTGCAGGCTCTTTCGGCACTGGAGATTTATGGGTATTGGAGATTAGTTGACGGGAGTTACATGGACATGATTCTGGGAATGATTTTGAAAAATGCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTACACTGGAATCAGATGGATTTCCTGGGGTGCTTGCTAGGCATTGTTTGAATGTATATGGTAACAGAGTAAATGAGTGCATGCCTAGCTTTGTCTGGAAGTTGGATGAGAAGCGAGTATGCATACATTTTGCAAGAGACATCCTAAAAGGGGGTAAGAGGAAGTTAGAGAGTTTCATGGATGAATGGAGGCAGAAGATTCCAGACGGAATGCAGCCCACTTTTGATCTTGTGGAAGGAGAGGTATTAACAGAGAAAATTGGAGTTGAAACATGGGTCCACGCCTTCAGTGTCGCTTCTTTGCCTTCCACTCCAGCTGAGCGTTTCTCTATTCTTTTCAGAGAGAGGCCAAAATGGGAATGGAAAGATCTTCAACCCTATATCAGAGATCTGAAGTTACCGGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAGGACACAACCATCAGCTGACGCAGAACCAGTTTTCAGTGCAAGATAG
Predicted protein sequences of Glyma.06g310400
>Glyma.06g310400.1.p sequence-type=predicted peptide transcript=Glyma.06g310400.1 locus=Glyma.06g310400 ID=Glyma.06g310400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELPPQSGSIGAEALKHIAPGSSISVAYHSSFGPYEDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPANHSEYYENQLKNDSNSDEEKVVAPVLKVVSGNMELIETAPRLDKLKSLLSEKPYKLEEDDMGNLEENQESRIGLYNWNDLVDNIQASDEELLSGLQALSALEIYGYWRLVDGSYMDMILGMILKNAVLNDWSLNALNEDEVVSTLESDGFPGVLARHCLNVYGNRVNECMPSFVWKLDEKRVCIHFARDILKGGKRKLESFMDEWRQKIPDGMQPTFDLVEGEVLTEKIGVETWVHAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKLPGLSSEGLLLKYTRRTQPSADAEPVFSAR*

>Glyma.06g310400.2.p sequence-type=predicted peptide transcript=Glyma.06g310400.2 locus=Glyma.06g310400 ID=Glyma.06g310400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELPPQSGSIGAEALKHIAPGSSISVAYHSSFGPYEDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPANHSEYYENQLKNDSNSDEEKVVAPVLKVVSGNMELIETAPRLDKLKSLLSEKPYKLEEDDMGNLEENQESRIGLYNWNDLVDNIQASDEELLSGLQALSALEIYGYWRLVDGSYMDMILGMILKNAVLNDWSLNALNEDEVVSTLESDGFPGVLARHCLNVYGNRVNECMPSFVWKLDEKRVCIHFARDILKGGKRKLESFMDEWRQKIPDGMQPTFDLVEGEVLTEKIGVETWVHAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKLPGLSSEGLLLKYTRRTQPSADAEPVFSAR*






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