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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32210.1 | AT | succinate dehydrogenase 3-2 | JGI | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | EnsemblGenomes | N/A | IEA |
| GO:0006121 | GO-bp | mitochondrial electron transport, succinate to ubiquinone | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005749 | GO-cc | mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0045281 | GO-cc | succinate dehydrogenase complex | EnsemblGenomes | N/A | IEA |
| GO:0000104 | GO-mf | succinate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016627 | GO-mf | oxidoreductase activity, acting on the CH-CH group of donors | EnsemblGenomes | N/A | IEA |
| GO:0016627 | GO-mf | oxidoreductase activity, acting on the CH-CH group of donors | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| PTHR10978 | Panther | SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT | JGI | N/A | IEA |
| PF01127 | PFAM | Succinate dehydrogenase/Fumarate reductase transmembrane subunit | JGI | N/A | IEA |
| PWY-3781 | SoyCyc9 | aerobic respiration I (cytochrome c) | Plant Metabolic Network | ISS | |
| PWY-4302 | SoyCyc9 | aerobic respiration III (alternative oxidase pathway) | Plant Metabolic Network | ISS | |
| GN7V-43189 | SoyCyc9-rxn | succinate:quinone oxidoreductase | Plant Metabolic Network | ISS |
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Glyma.06g305600 not represented in the dataset |
Glyma.06g305600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g099000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g46180 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g305600.1 sequence-type=CDS polypeptide=Glyma.06g305600.1.p locus=Glyma.06g305600 ID=Glyma.06g305600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGTGGCTCCTCCGATCCACCAAGTCTAAGTTCCTCTCTTCCTCTTCCTCTTCTTCTCTTTCTAGAACCTTCCCCTCTCTCCCTCGCCCTCAGATTGGAGCCATCTCTCCCCTCCCCGATCTCTTCCACCGCAACACCGCCACCATGCCTTTCGCGAAGGAAAACGCTTCCGGTGGAAACTTGACCGGTCTTCCCAAAGTTCCCGCGAATAAGCTTGGCAGTGATTCTGATGCGACCAATTCTTCGAGGTACAAAGCTTCTGGACTGAACACCAATGTGCTGGCTGGAGCTAGATATGTCTCTAGAGTTTGGGCTGCACAGGGTCAAATGCCATTGGGAGTCAATACTGTGATGGCTAGAAGTTTTGAGAGAAGTATGGAAGCTGGCACATTGGGAATGATTGGTCATAAACGTTTTATGAGTGACATCCCAAGTAAAACCAGTGAGACAAACCCATCTGGTTTTCGTCCGTTATCTCCTCATCTTCCTCTTTATCAGCCCCAACTTTCTTCGACCCTCTCAATTTTCAATAGAATTGCTGGAGCTTTCCTAGCTGGTGTCATTTTGGTTTTTTATATGATCTATATGAAGTTGGGTTTGGTTAGCCTCACCTATGACTCTTTCTACCAGTTCATATTTTATTCATCGAAACTCAACCTACTTGTCATGGAGATTTCTGCCTTAGCCGTGTCCTATCATCTGTATAGTGCAATTCGTCATTTATTCTTATGA
>Glyma.06g305600.1.p sequence-type=predicted peptide transcript=Glyma.06g305600.1 locus=Glyma.06g305600 ID=Glyma.06g305600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSWLLRSTKSKFLSSSSSSSLSRTFPSLPRPQIGAISPLPDLFHRNTATMPFAKENASGGNLTGLPKVPANKLGSDSDATNSSRYKASGLNTNVLAGARYVSRVWAAQGQMPLGVNTVMARSFERSMEAGTLGMIGHKRFMSDIPSKTSETNPSGFRPLSPHLPLYQPQLSSTLSIFNRIAGAFLAGVILVFYMIYMKLGLVSLTYDSFYQFIFYSSKLNLLVMEISALAVSYHLYSAIRHLFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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