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Report for Sequence Feature Glyma.06g292000

Feature Type:gene_model
Chromosome:Gm06
Start:48081084
stop:48084476
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g292000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53590.1AT Calcium-dependent lipid-binding (CaLB domain) family protein JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR16122Panther MCTP-RELATED JGI N/AIEA
PTHR16122:SF13Panther MULTIPLE C2 DOMAIN AND TRANSMEMBRANE REGION PROTEIN, ISOFORM A JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA

Proteins Associated with Glyma.06g292000
LocusGene SymbolProtein Name
C2-54 C2 domain containing protein gene 54

Expression Patterns of Glyma.06g292000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g292000 not represented in the dataset
Glyma.06g292000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g292000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g44701 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g292000
>Glyma.06g292000.1 sequence-type=CDS polypeptide=Glyma.06g292000.1.p locus=Glyma.06g292000 ID=Glyma.06g292000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATGTTGAAGGGAAGGTCTTAATTGGGGTAAAGTTTCTCCCGACATGGTCTTTTATTGGCTATTTGCGTGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTATCAATCCTGATAAGCCGTTGTCAATTGCTTTTGAACAAACCCTTGTTGAGACTTTTGCAATAATCGATTTACTGGGTAGCCCTGGGATTCTACTTGGGGTATCCCTTACCTGTGATTCTTATGATCTTCTTCTCTTAGAATTTTTATTTGTGAAAGTTCAAATGGGTGTATACAAATTCAGGACAAAAATACAAAGGAAAACACTTACTCCAAAATGGCATGAGGAATTTAAAATTCCCATCATAACATGTGAGTCTGACAATGTGCTGGTTATTGCAGTTCGTGACAAGGATCATTTCTATGATGATATCCTTGGGTTTGTTCCATTTTATAAACTTTGTATTTTTTAA
Predicted protein sequences of Glyma.06g292000
>Glyma.06g292000.1.p sequence-type=predicted peptide transcript=Glyma.06g292000.1 locus=Glyma.06g292000 ID=Glyma.06g292000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHVEGKVLIGVKFLPTWSFIGYLRVCFVEPPYFQMTINPDKPLSIAFEQTLVETFAIIDLLGSPGILLGVSLTCDSYDLLLLEFLFVKVQMGVYKFRTKIQRKTLTPKWHEEFKIPIITCESDNVLVIAVRDKDHFYDDILGFVPFYKLCIF*






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