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Report for Sequence Feature Glyma.06g285100

Feature Type:gene_model
Chromosome:Gm06
Start:47367879
stop:47368469
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g285100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G06280.1AT LOB domain-containing protein 2 JGI N/AIEA
PF03195PFAM Protein of unknown function DUF260 JGI N/AIEA

Proteins Associated with Glyma.06g285100
LocusGene SymbolProtein Name
LBD28 LBD domain-containing transcription factor

Expression Patterns of Glyma.06g285100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g285100 not represented in the dataset
Glyma.06g285100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g285100
ParalogEvidenceComments
Glyma.12g120700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g285100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g43811 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g285100
>Glyma.06g285100.1 sequence-type=CDS polypeptide=Glyma.06g285100.1.p locus=Glyma.06g285100 ID=Glyma.06g285100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAAGAAATAATAGTGGAATGCATCCAGCATGTGCAGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAACTGTATATTGGGACCTTACTTTCCATCAAATAAAAACCAAGAGTTCCATGCTGTGCACAAGGTTTTTGGTGTTAGCAACATTACCAAGTTGGTAAAGAATGCTAAAACGGAAGATAGAAGAAAAGTTGTGGACTCATTGATATGGGAAGCATGTTGTAGGCAAAGGGACCCTATACAAGGTCCTTATGGAGAGTACACAAAAGTTTACAACGAGTATAAGAAAGTGTTGGATGAACTTAAGAGATTCAAAAGCCAAAACCAGCTTTTGCAAATTCCCTCTCTAGGATTAAAGTCTGTACAAGGTTTGATTACTTGCAGTGAAACCAAAGGGGAACACAAAGCGACCATTGATAGTGCGTTGGATTATCTTCATGGGAAAAAGAATGGTATTATTGATTCTGATAATTATAATACTTATTGTTCGAATTATTTGCAAGAGTTTCAAAATATGAGGCCTGAAGTTGTCATACCGTTTCGACAACACTCTCAATCATACTACACTACAGGTATCAATTAA
Predicted protein sequences of Glyma.06g285100
>Glyma.06g285100.1.p sequence-type=predicted peptide transcript=Glyma.06g285100.1 locus=Glyma.06g285100 ID=Glyma.06g285100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRNNSGMHPACAACKHQRKKCSENCILGPYFPSNKNQEFHAVHKVFGVSNITKLVKNAKTEDRRKVVDSLIWEACCRQRDPIQGPYGEYTKVYNEYKKVLDELKRFKSQNQLLQIPSLGLKSVQGLITCSETKGEHKATIDSALDYLHGKKNGIIDSDNYNTYCSNYLQEFQNMRPEVVIPFRQHSQSYYTTGIN*






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