SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.06g272400): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.06g272400): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.06g272400

Feature Type:gene_model
Chromosome:Gm06
Start:46318529
stop:46320622
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g272400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58720.2AT RING/U-box superfamily protein JGI N/AIEA
GO:0000209GO-bp protein polyubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005680GO-cc anaphase-promoting complex JGI N/AIEA
GO:0004842GO-mf ubiquitin-protein ligase activity JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI N/AIEA
PTHR22766Panther RING FINGER PROTEIN 24-RELATED JGI N/AIEA
PTHR22766:SF26Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA

Expression Patterns of Glyma.06g272400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g272400 not represented in the dataset
Glyma.06g272400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g272400
ParalogEvidenceComments
Glyma.12g131800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g272400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g42450 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g272400
>Glyma.06g272400.2 sequence-type=transcript locus=Glyma.06g272400 ID=Glyma.06g272400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAAAGAAAGGCCCACAATGGTCGTCTGTAATTGAAACTATCACTTATCATCTCATATACAAATTTCAAACTAGTGATGCAACTATATATATTCCCTTCTAAAATTTTCATCTCTCATTTTATTCCTTTTTTAGGAGCCCTTTCCATCTTCTCAGAACTTCCAATACGCATCATATTAATAAAGCATCCATCAACATATGAGAATAAGATTCTTCCTTGATTTATTTTGCTTAATTTCTGAGCAGCAGCTACTAGAGCATCTTCAACATGGAGTGAGAATCAGGCTTTGAATCAGCATGGAAAATGAAGGAACTCATCAAAAAGTATGAGTAGAAGTGACACCATTATCACTGTAAGGATATATTCTTGCTTACACCCACATGAACAGAACAAATGAATTCCCGAAGTTGACATATGAAGCAATATTTGCACCCCGAAAAAGAAAAGTATTTTACATGATCAATTGAAGAGGAAGGTGAAACCATCATGAGCCGCAACATGAACAATTTCACACCTTTGCCAGGGTCATGGCAAAGAGGTTTTAGATCCTTTGATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGCCACCTTTTCCTGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAAGATATCGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCGGTGGTAGAAATTACCAAATCAGCAGCTTTGAGCAAGCTCAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCCGCAAAGCCTTTGAAAGAGAAGCAGGGAGAAAATGATGAAGATAGAAAGAGTTGTGCTATTTGTCTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATTGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGAATGACTTACTAATGTACACACAAGAATTTGCTAGAGTTGGGAGATTGATTTATTTGTAGCTTATTCCAGCATATACACTGAATTTACTATGATATTTGATAGGTAGAACTTGTGAGTGATATAAAAATTAATGAGATAAGATTGGAAACCATTTTGTTATCC
Coding sequences of Glyma.06g272400
>Glyma.06g272400.1 sequence-type=CDS polypeptide=Glyma.06g272400.1.p locus=Glyma.06g272400 ID=Glyma.06g272400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCCGCAACATGAACAATTTCACACCTTTGCCAGGGTCATGGCAAAGAGGTTTTAGATCCTTTGATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGCCACCGATGGCAGAAGTTCGGGTGTATTAGCTCGAGAACGATTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCTGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAAGATATCGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCGGTGGTAGAAATTACCAAATCAGCAGCTTTGAGCAAGCTCAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCCGCAAAGCCTTTGAAAGAGAAGCAGGGAGAAAATGATGAAGATAGAAAGAGTTGTGCTATTTGTCTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATTGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGAATGACTTACTAA

>Glyma.06g272400.2 sequence-type=CDS polypeptide=Glyma.06g272400.2.p locus=Glyma.06g272400 ID=Glyma.06g272400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGCCACCTTTTCCTGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAAGATATCGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCGGTGGTAGAAATTACCAAATCAGCAGCTTTGAGCAAGCTCAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCCGCAAAGCCTTTGAAAGAGAAGCAGGGAGAAAATGATGAAGATAGAAAGAGTTGTGCTATTTGTCTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATTGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGAATGACTTACTAA
Predicted protein sequences of Glyma.06g272400
>Glyma.06g272400.1.p sequence-type=predicted peptide transcript=Glyma.06g272400.1 locus=Glyma.06g272400 ID=Glyma.06g272400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSRNMNNFTPLPGSWQRGFRSFDDHTFNHRESNEVPVFYRSHSTHATDGRSSGVLARERFSDFRNPLGFHSIPNFPAPPPRRQQIHAHNEDIGRLREIFLHPPQRSTFQTSTQALPVVEITKSAALSKLKKVVYDPPPKRYARRVSLYYRNNAAKPLKEKQGENDEDRKSCAICLEDFDPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEIGRGNHSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGRMTY*

>Glyma.06g272400.2.p sequence-type=predicted peptide transcript=Glyma.06g272400.2 locus=Glyma.06g272400 ID=Glyma.06g272400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTLSIIVNPMRCLCFTDLTLLMPPFPAPPPRRQQIHAHNEDIGRLREIFLHPPQRSTFQTSTQALPVVEITKSAALSKLKKVVYDPPPKRYARRVSLYYRNNAAKPLKEKQGENDEDRKSCAICLEDFDPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEIGRGNHSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGRMTY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo