SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g263000

Feature Type:gene_model
Chromosome:Gm06
Start:45034182
stop:45039949
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g263000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20650.1AT mRNA capping enzyme family protein JGI N/AIEA
GO:0006370GO-bp 7-methylguanosine mRNA capping EnsemblGenomesN/AIEA
GO:0006397GO-bp mRNA processing EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0036265GO-bp RNA (guanine-N7)-methylation EnsemblGenomesN/AIEA
GO:0106005GO-bp RNA 5'-cap (guanine-N7)-methylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005845GO-cc mRNA cap binding complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0004482GO-mf mRNA (guanine-N7-)-methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG1975 KOG mRNA cap methyltransferase JGI N/AIEA
PTHR12189Panther MRNA (GUANINE-7-)METHYLTRANSFERASE JGI N/AIEA
PF03291PFAM mRNA capping enzyme JGI N/AIEA

Expression Patterns of Glyma.06g263000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g263000
ParalogEvidenceComments
Glyma.12g139600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g263000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g41190 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g263000
>Glyma.06g263000.1 sequence-type=CDS polypeptide=Glyma.06g263000.1.p locus=Glyma.06g263000 ID=Glyma.06g263000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACGAGGGTACCAGGAATCCCCTTCAAGCTCGTTAGGTCCACCTCATTCCAGAGCTAGACATGATCCTCAAGGTGGTGCACACTTTGTTGAGGATGAAAGCACAAAGATTTTTGCTCGGAAAGTAGCAGATCATTATAGTGCGAGATCCAACCAGACTTTGGAAGAACGGGAGGCTAGTCCGATAATTCATTTGAAGAAACTCAATAATTGGATTAAAAGCGTCTTAATTCAGCTTTATGCTCGTCGAGGAGATGCAGTACTTGACCTCGCCTGTGGCAAGGGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCGATCAAGGACTGCCGGACACGTTACAACGGTGATGCTGACCATCATCAGCGACGTAAAAAGTTTACATTTCCTGCTCGCCTTATATGTGGAGATTGTTATGAGGTTCGCTTGGACAAAGTTCTTGCAGATGATGCTCCTTTTGATATTTGTAGCTGCCAGTTTGCATTGCATTACTCATGGTCTACGGAGGCCCGTGCCCGGCAAGCATTGGCTAATGTGTCAGCTTTACTTCGCCCAGGAGGCATTTTCATTGGAACAATGCCTGATGCCAATGTGATAATCAAGAAGCTTAGAGAAGCTGAAGGATTAACTTTTGGCAACAGAGTCTATTGGGTGCGTTTTGATGAAGAATTTTCTGATAAGAAATTTAAATCTTCCAGCCCTTTTGGAATAAAGTACACGTTCCATTTGGAGGACGCTGTTGATTGTCCTGAATGGATTGTCCCCTTCCATGTATTCAAGTCATTAGCTGAAGAGAATGACTTTGAGCTTGTTTTCGCAAAGAACTCACATGAATTTGTGCATGAGTATATGAAAAAACCGGAATTTGTGGAGCTCATGCGAAGACTTGGTGCATTGGGAGATGGCAACCAAGATCAAAGTACACTCTCTGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAGCGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCAATGCACATTTCAGAGGAAGACATCATGTACATTAGCACTGATGATTAA
Predicted protein sequences of Glyma.06g263000
>Glyma.06g263000.1.p sequence-type=predicted peptide transcript=Glyma.06g263000.1 locus=Glyma.06g263000 ID=Glyma.06g263000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRGYQESPSSSLGPPHSRARHDPQGGAHFVEDESTKIFARKVADHYSARSNQTLEEREASPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIKDCRTRYNGDADHHQRRKKFTFPARLICGDCYEVRLDKVLADDAPFDICSCQFALHYSWSTEARARQALANVSALLRPGGIFIGTMPDANVIIKKLREAEGLTFGNRVYWVRFDEEFSDKKFKSSSPFGIKYTFHLEDAVDCPEWIVPFHVFKSLAEENDFELVFAKNSHEFVHEYMKKPEFVELMRRLGALGDGNQDQSTLSADEWEAAYLYMSFVLRKRGQPDKTQQSGRRNRGSMHISEEDIMYISTDD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo