Glyma.06g249300

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Report for Sequence Feature Glyma.06g249300

Feature Type:	gene_model
Chromosome:	Gm06
Start:	42115744
stop:	42121879
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g249300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15520.1	AT	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	JGI	N/A	IEA
GO:0000413	GO-bp	protein peptidyl-prolyl isomerization	EnsemblGenomes	N/A	IEA
GO:0006457	GO-bp	protein folding	JGI	N/A	IEA
GO:0003755	GO-mf	peptidyl-prolyl cis-trans isomerase activity	EnsemblGenomes	N/A	IEA
GO:0003755	GO-mf	peptidyl-prolyl cis-trans isomerase activity	JGI	N/A	IEA
GO:0016853	GO-mf	isomerase activity	EnsemblGenomes	N/A	IEA
PTHR11071	Panther	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	JGI	N/A	IEA
PTHR11071:SF75	Panther		JGI	N/A	IEA
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI	N/A	IEA

Proteins Associated with Glyma.06g249300

Locus	Gene Symbol	Protein Name
	CYP48	peptidyl-prolyl cis-trans isomerase CYP48

Expression Patterns of Glyma.06g249300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g249300 not represented in the dataset	Glyma.06g249300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g249300

Paralog	Evidence	Comments
Glyma.12g148600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g249300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g38470	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g249300

Limit To All Plant Sequences

>Glyma.06g249300.2 sequence-type=transcript locus=Glyma.06g249300 ID=Glyma.06g249300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACGTGTTCTCGCTCTTCCACTTCCACACAAAGAACAGATTAGGCGCGCACTCACCACACCAATTCGCTTCAATGGCGTTCCCTCTCTCTCCCTCCTTCAACCCCTCCATCGCTCGAAACCGAATCGCGTGCTTCTCGAAGAAGCAGCACCGCCACGTCATCACAAAGGATACGGAAGTGGTGGTGGTAGACAGAGACACGGCGCGTGCCACGTCAGCGGGCGCGATGCTGGAGAGGATAATGAAGCGGTTGAGGAGTGTGGCGGTGGTTCCGATCGTGATTGCGTCGGTTCAGATAAGCGCGTTGGTGGCGCCGTTAGTTGATTACGTGGCGTCTCCGGGTGCCGCCGAAGCGGTTCTGTATTCGCCGGATACGAAGGTTCCGAGGACGGGAGAAGTTGCTCTCCGGAAAGCCATTCCTGCCAATGCTAACATGAAGGCTATTCAGGACACTCTTGAAGATATTTCGTACCTGTTGAGGATTCCGCAGAGAAAACCGTATGGAACAATGGAGGGGAATGTGAAGAAAGCTTTGAAGATAGCAGTAGATGAAAAGAATTCTATATTGGCTAGTATACCAGCAGAACTGAAGGAAAGGGCCTCTTTGGTACATGCGTCTCTAATAGAGGGAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTGCATCTACACTGGATACGGTAGCAGAGCTGGAGTTGTTACAGGCACCAGGATTATCATTTTTGTTGCCAGAGCAATATGCACAACAATATCCACGGCTTTCAGGGAGAGGAACTGTTGCGTTCACCATTGAGAAAGGAGATGGTTCAACATTTTCTCCAGTTGGGGGAGAGCAGAAAAATACTGCCACCATTCAGGTTGTTATTGATGGATACTCAGCTCCACTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCCTATAATGGCACAAAGCTCAACTGTATCAACCAAGCTGTTATCTCAGATAATGGAGTTGATAAGAACACTGGTTATAGTGTTCCCTTGGAAATAATGCCCTCTGGACAATTTGAGCCCCTTTACAAAACAACATTAAGTGTGCAGGATGGAGAACTGCCGGTTCTTCCGCTATCTGTTTATGGGGCACTTGCTATGGCTCACAGCGAAGCCTCGGATGAGTATTCATCGCCTTATCAGTTTTTCTTCTATCTCTATGATAAACGAAGTGCTGGTTTGGGAGGGATATCATTTGATGAAGGACAATTTTCAGTTTTTGGATACACGACTACCGGGAGAGACATTCTACCCCAAATAAAAACTGGTGATGTTATTCGTTCTGCAAAGCTTATTGAAGGCCAAGACCGTCTTGTATTGCCGAAGGAAAGTTGAGTAGATTCCCTTACGGTGTTACCCAAGTAGGAACAAATCATTCATTCTTTTTAATATATATAAGCTTTGTGGACGGCATCAGCCTAATTTTCTTGTTGCAGGTTGTGTTGTAAATTACTAAATTATATAGAAATGAGTTGAAATTTCTATTGATTAAATATCCAATGAAACAGTGAGAGAAATTCTCCAGAAAGGAATCCCTTTCAGTGACTTAATTCTTCAATGTTATCCCCTGATTTCTTGTACAATAGAGTATATCACAGGGTGCGTGTACCAAATGGCTTAATTTTGGGAAGAAATTATAGTCATTTTCTTAGCATATACCAGAGGTGATTATAGACAAAGGTGCATTTCATTC

>Glyma.06g249300.3 sequence-type=transcript locus=Glyma.06g249300 ID=Glyma.06g249300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTGTTAACTTTTAAATAACTACTTAAAAAAGAGAACTTTTTTTTGATAAAGTTCTTCATTAAACTTGAAATAAGTTTAAAAGAGCTGTTAGAAAGTTAATCTAAATGAGTTAAATCTAGATTTGGACAGTAGAGGGGCTTGAAGCTACTCTGACTGAAGCAGTGAATAATGCACAATGGACACTCTTGAAGATATTTCGTACCTGTTGAGGATTCCGCAGAGAAAACCGTATGGAACAATGGAGGGGAATGTGAAGAAAGCTTTGAAGATAGCAGTAGATGAAAAGAATTCTATATTGGCTAGTATACCAGCAGAACTGAAGGAAAGGGCCTCTTTGGTACATGCGTCTCTAATAGAGGGAAAGGGGGGCTTGCAAACTCTACTTCAATCTATAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTGCATCTACACTGGATACGGTAGCAGAGCTGGAGTTGTTACAGGCACCAGGATTATCATTTTTGTTGCCAGAGCAATATGCACAACAATATCCACGGCTTTCAGGGAGAGGAACTGTTGCGTTCACCATTGAGAAAGGAGATGGTTCAACATTTTCTCCAGTTGGGGGAGAGCAGAAAAATACTGCCACCATTCAGGTTGTTATTGATGGATACTCAGCTCCACTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCCTATAATGGCACAAAGCTCAACTGTATCAACCAAGCTGTTATCTCAGATAATGGAGTTGATAAGAACACTGGTTATAGTGTTCCCTTGGAAATAATGCCCTCTGGACAATTTGAGCCCCTTTACAAAACAACATTAAGTGTGCAGGATGGAGAACTGCCGGTTCTTCCGCTATCTGTTTATGGGGCACTTGCTATGGCTCACAGCGAAGCCTCGGATGAGTATTCATCGCCTTATCAGTTTTTCTTCTATCTCTATGATAAACGAAGTGCTGGTTTGGGAGGGATATCATTTGATGAAGGACAATTTTCAGTTTTTGGATACACGACTACCGGGAGAGACATTCTACCCCAAATAAAAACTGGTGATGTTATTCGTTCTGCAAAGCTTATTGAAGGCCAAGACCGTCTTGTATTGCCGAAGGAAAGTTGAGTAGATTCCCTTACGGTGTTACCCAAGTAGGAACAAATCATTCATTCTTTTTAATATATATAAGCTTTGTGGACGGCATCAGCCTAATTTTCTTGTTGCAGGTTGTGTTGTAAATTACTAAATTATATAGAAATGAGTTGAAATTTCTATTGATTAAATATCCAATGAAACAGTGAGAGAAATTCTCCAGAAAGGAATCCCTTTCAGTGACTTAATTCTTCAATGTTATCCCCTGATTTCTTGTACAATAGAGTATATCACAGGGTGCGTGTACCAAATGGCTTAATTTTGGGAAGAAATTATAGTCATTTTCTTAGCATATACCAGAGGTGATTATAGACAAAGGTGCATTTCATTC

Coding sequences of Glyma.06g249300

Limit To All Plant Sequences

>Glyma.06g249300.1 sequence-type=CDS polypeptide=Glyma.06g249300.1.p locus=Glyma.06g249300 ID=Glyma.06g249300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTCCCTCTCTCTCCCTCCTTCAACCCCTCCATCGCTCGAAACCGAATCGCGTGCTTCTCGAAGAAGCAGCACCGCCACGTCATCACAAAGGATACGGAAGTGGTGGTGGTAGACAGAGACACGGCGCGTGCCACGTCAGCGGGCGCGATGCTGGAGAGGATAATGAAGCGGTTGAGGAGTGTGGCGGTGGTTCCGATCGTGATTGCGTCGGTTCAGATAAGCGCGTTGGTGGCGCCGTTAGTTGATTACGTGGCGTCTCCGGGTGCCGCCGAAGCGGTTCTGTATTCGCCGGATACGAAGGTTCCGAGGACGGGAGAAGTTGCTCTCCGGAAAGCCATTCCTGCCAATGCTAACATGAAGGCTATTCAGGACACTCTTGAAGATATTTCGTACCTGTTGAGGATTCCGCAGAGAAAACCGTATGGAACAATGGAGGGGAATGTGAAGAAAGCTTTGAAGATAGCAGTAGATGAAAAGAATTCTATATTGGCTAGTATACCAGCAGAACTGAAGGAAAGGGCCTCTTTGGTACATGCGTCTCTAATAGAGGGAAAGGGGGGCTTGCAAACTCTACTTCAATCTATAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTGCATCTACACTGGATACGGTAGCAGAGCTGGAGTTGTTACAGGCACCAGGATTATCATTTTTGTTGCCAGAGCAATATGCACAACAATATCCACGGCTTTCAGGGAGAGGAACTGTTGCGTTCACCATTGAGAAAGGAGATGGTTCAACATTTTCTCCAGTTGGGGGAGAGCAGAAAAATACTGCCACCATTCAGGTTGTTATTGATGGATACTCAGCTCCACTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCCTATAATGGCACAAAGCTCAACTGTATCAACCAAGCTGTTATCTCAGATAATGGAGTTGATAAGAACACTGGTTATAGTGTTCCCTTGGAAATAATGCCCTCTGGACAATTTGAGCCCCTTTACAAAACAACATTAAGTGTGCAGGATGGAGAACTGCCGGTTCTTCCGCTATCTGTTTATGGGGCACTTGCTATGGCTCACAGCGAAGCCTCGGATGAGTATTCATCGCCTTATCAGTTTTTCTTCTATCTCTATGATAAACGAAGTGCTGGTTTGGGAGGGATATCATTTGATGAAGGACAATTTTCAGTTTTTGGATACACGACTACCGGGAGAGACATTCTACCCCAAATAAAAACTGGTGATGTTATTCGTTCTGCAAAGCTTATTGAAGGCCAAGACCGTCTTGTATTGCCGAAGGAAAGTTGA

>Glyma.06g249300.2 sequence-type=CDS polypeptide=Glyma.06g249300.2.p locus=Glyma.06g249300 ID=Glyma.06g249300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTTCCCTCTCTCTCCCTCCTTCAACCCCTCCATCGCTCGAAACCGAATCGCGTGCTTCTCGAAGAAGCAGCACCGCCACGTCATCACAAAGGATACGGAAGTGGTGGTGGTAGACAGAGACACGGCGCGTGCCACGTCAGCGGGCGCGATGCTGGAGAGGATAATGAAGCGGTTGAGGAGTGTGGCGGTGGTTCCGATCGTGATTGCGTCGGTTCAGATAAGCGCGTTGGTGGCGCCGTTAGTTGATTACGTGGCGTCTCCGGGTGCCGCCGAAGCGGTTCTGTATTCGCCGGATACGAAGGTTCCGAGGACGGGAGAAGTTGCTCTCCGGAAAGCCATTCCTGCCAATGCTAACATGAAGGCTATTCAGGACACTCTTGAAGATATTTCGTACCTGTTGAGGATTCCGCAGAGAAAACCGTATGGAACAATGGAGGGGAATGTGAAGAAAGCTTTGAAGATAGCAGTAGATGAAAAGAATTCTATATTGGCTAGTATACCAGCAGAACTGAAGGAAAGGGCCTCTTTGGTACATGCGTCTCTAATAGAGGGAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTGCATCTACACTGGATACGGTAGCAGAGCTGGAGTTGTTACAGGCACCAGGATTATCATTTTTGTTGCCAGAGCAATATGCACAACAATATCCACGGCTTTCAGGGAGAGGAACTGTTGCGTTCACCATTGAGAAAGGAGATGGTTCAACATTTTCTCCAGTTGGGGGAGAGCAGAAAAATACTGCCACCATTCAGGTTGTTATTGATGGATACTCAGCTCCACTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCCTATAATGGCACAAAGCTCAACTGTATCAACCAAGCTGTTATCTCAGATAATGGAGTTGATAAGAACACTGGTTATAGTGTTCCCTTGGAAATAATGCCCTCTGGACAATTTGAGCCCCTTTACAAAACAACATTAAGTGTGCAGGATGGAGAACTGCCGGTTCTTCCGCTATCTGTTTATGGGGCACTTGCTATGGCTCACAGCGAAGCCTCGGATGAGTATTCATCGCCTTATCAGTTTTTCTTCTATCTCTATGATAAACGAAGTGCTGGTTTGGGAGGGATATCATTTGATGAAGGACAATTTTCAGTTTTTGGATACACGACTACCGGGAGAGACATTCTACCCCAAATAAAAACTGGTGATGTTATTCGTTCTGCAAAGCTTATTGAAGGCCAAGACCGTCTTGTATTGCCGAAGGAAAGTTGA

>Glyma.06g249300.3 sequence-type=CDS polypeptide=Glyma.06g249300.3.p locus=Glyma.06g249300 ID=Glyma.06g249300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACACTCTTGAAGATATTTCGTACCTGTTGAGGATTCCGCAGAGAAAACCGTATGGAACAATGGAGGGGAATGTGAAGAAAGCTTTGAAGATAGCAGTAGATGAAAAGAATTCTATATTGGCTAGTATACCAGCAGAACTGAAGGAAAGGGCCTCTTTGGTACATGCGTCTCTAATAGAGGGAAAGGGGGGCTTGCAAACTCTACTTCAATCTATAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTGCATCTACACTGGATACGGTAGCAGAGCTGGAGTTGTTACAGGCACCAGGATTATCATTTTTGTTGCCAGAGCAATATGCACAACAATATCCACGGCTTTCAGGGAGAGGAACTGTTGCGTTCACCATTGAGAAAGGAGATGGTTCAACATTTTCTCCAGTTGGGGGAGAGCAGAAAAATACTGCCACCATTCAGGTTGTTATTGATGGATACTCAGCTCCACTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCCTATAATGGCACAAAGCTCAACTGTATCAACCAAGCTGTTATCTCAGATAATGGAGTTGATAAGAACACTGGTTATAGTGTTCCCTTGGAAATAATGCCCTCTGGACAATTTGAGCCCCTTTACAAAACAACATTAAGTGTGCAGGATGGAGAACTGCCGGTTCTTCCGCTATCTGTTTATGGGGCACTTGCTATGGCTCACAGCGAAGCCTCGGATGAGTATTCATCGCCTTATCAGTTTTTCTTCTATCTCTATGATAAACGAAGTGCTGGTTTGGGAGGGATATCATTTGATGAAGGACAATTTTCAGTTTTTGGATACACGACTACCGGGAGAGACATTCTACCCCAAATAAAAACTGGTGATGTTATTCGTTCTGCAAAGCTTATTGAAGGCCAAGACCGTCTTGTATTGCCGAAGGAAAGTTGA

Predicted protein sequences of Glyma.06g249300

Limit To All Plant Sequences

>Glyma.06g249300.1.p sequence-type=predicted peptide transcript=Glyma.06g249300.1 locus=Glyma.06g249300 ID=Glyma.06g249300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFPLSPSFNPSIARNRIACFSKKQHRHVITKDTEVVVVDRDTARATSAGAMLERIMKRLRSVAVVPIVIASVQISALVAPLVDYVASPGAAEAVLYSPDTKVPRTGEVALRKAIPANANMKAIQDTLEDISYLLRIPQRKPYGTMEGNVKKALKIAVDEKNSILASIPAELKERASLVHASLIEGKGGLQTLLQSIKEQDADKVSVNLASTLDTVAELELLQAPGLSFLLPEQYAQQYPRLSGRGTVAFTIEKGDGSTFSPVGGEQKNTATIQVVIDGYSAPLTAGNFAKLVMDGAYNGTKLNCINQAVISDNGVDKNTGYSVPLEIMPSGQFEPLYKTTLSVQDGELPVLPLSVYGALAMAHSEASDEYSSPYQFFFYLYDKRSAGLGGISFDEGQFSVFGYTTTGRDILPQIKTGDVIRSAKLIEGQDRLVLPKES*

>Glyma.06g249300.2.p sequence-type=predicted peptide transcript=Glyma.06g249300.2 locus=Glyma.06g249300 ID=Glyma.06g249300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFPLSPSFNPSIARNRIACFSKKQHRHVITKDTEVVVVDRDTARATSAGAMLERIMKRLRSVAVVPIVIASVQISALVAPLVDYVASPGAAEAVLYSPDTKVPRTGEVALRKAIPANANMKAIQDTLEDISYLLRIPQRKPYGTMEGNVKKALKIAVDEKNSILASIPAELKERASLVHASLIEGKEQDADKVSVNLASTLDTVAELELLQAPGLSFLLPEQYAQQYPRLSGRGTVAFTIEKGDGSTFSPVGGEQKNTATIQVVIDGYSAPLTAGNFAKLVMDGAYNGTKLNCINQAVISDNGVDKNTGYSVPLEIMPSGQFEPLYKTTLSVQDGELPVLPLSVYGALAMAHSEASDEYSSPYQFFFYLYDKRSAGLGGISFDEGQFSVFGYTTTGRDILPQIKTGDVIRSAKLIEGQDRLVLPKES*

>Glyma.06g249300.3.p sequence-type=predicted peptide transcript=Glyma.06g249300.3 locus=Glyma.06g249300 ID=Glyma.06g249300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDTLEDISYLLRIPQRKPYGTMEGNVKKALKIAVDEKNSILASIPAELKERASLVHASLIEGKGGLQTLLQSIKEQDADKVSVNLASTLDTVAELELLQAPGLSFLLPEQYAQQYPRLSGRGTVAFTIEKGDGSTFSPVGGEQKNTATIQVVIDGYSAPLTAGNFAKLVMDGAYNGTKLNCINQAVISDNGVDKNTGYSVPLEIMPSGQFEPLYKTTLSVQDGELPVLPLSVYGALAMAHSEASDEYSSPYQFFFYLYDKRSAGLGGISFDEGQFSVFGYTTTGRDILPQIKTGDVIRSAKLIEGQDRLVLPKES*

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