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Report for Sequence Feature Glyma.06g248900

Feature Type:gene_model
Chromosome:Gm06
Start:42013055
stop:42015422
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g248900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27410.2AT NAC (No Apical Meristem) domain transcriptional regulator superfamily protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PF02365PFAM No apical meristem (NAM) protein JGI N/AIEA

Proteins Associated with Glyma.06g248900
LocusGene SymbolProtein Name
NAC3 NAC domain protein NAC3

Expression Patterns of Glyma.06g248900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g248900
ParalogEvidenceComments
Glyma.12g149100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g248900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g38410 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g248900
>Glyma.06g248900.1 sequence-type=CDS polypeptide=Glyma.06g248900.1.p locus=Glyma.06g248900 ID=Glyma.06g248900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGTTCCAGAGAGAGACCCTCTTGCACAATTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACAGATGAGGAGCTTTTGGTTCAGTACCTTTGCCGCAAGGTTGCTGGCCATCATTTCTCTCTTCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGGTAAGGCAGTGTTTGGAGAGAAGGAGTGGTACTTTTTTAGCCCAAGAGACAGGAAGTACCCGAATGGTTCACGACCAAACAGAGTCGCGGGTTCTGGGTATTGGAAAGCAACTGGAACAGACAAGATCATCACCACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACATTGGCAAAGCACCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGCCTTCTCGATTCTTCCCGCAAACACAACCTCGGAACCGCAAAGCTTGATGATTGGGTTCTATGTCGTATCTATAAGAAGAACTCAAGTTCACAAAAGGTTGAGGCTAATTTTTTGGCTATGGAATGCAGCAATGGGTCATCACCTTCTTCATCGTCCCACGTGGATGACATGCTGGGATCGTTGCCGGAGATAAATGACCGGTGCTTCACCCTGCCACGAGTGAACTCACTCAGAACAATGCACCAGCAGGATGAGAAATTCGGGTCTCCGAACATGGGATCCGGGTTTTTCTCGGATTGGGTTAACTCGACCGATCTCGATTCGATTTCCGAATTCGAGTCGGGTTGCCAAACCCAAAGAATGGTGAATTATGATTGCAATGACTTTTTTGTTCCTTCTCTGCCGCCCTTGGGCCATGTGGACTACATGGTGGATGCACCTTTGGAGGAGGAGGTTCAAAGTGGTGTGAGAACCCGACGGGTCGACGGGCCGGGGCATTTTCAACCGAATCCAGATACCCGATTGTTACCGGGCTCAGGTGACCCATTCGGGTTTGGGTTTATTATGGGTCAGCAAGTTGGGTTCGGGGTTAGGGAGTGA
Predicted protein sequences of Glyma.06g248900
>Glyma.06g248900.1.p sequence-type=predicted peptide transcript=Glyma.06g248900.1 locus=Glyma.06g248900 ID=Glyma.06g248900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGSKTNWIMHEYRLLDSSRKHNLGTAKLDDWVLCRIYKKNSSSQKVEANFLAMECSNGSSPSSSSHVDDMLGSLPEINDRCFTLPRVNSLRTMHQQDEKFGSPNMGSGFFSDWVNSTDLDSISEFESGCQTQRMVNYDCNDFFVPSLPPLGHVDYMVDAPLEEEVQSGVRTRRVDGPGHFQPNPDTRLLPGSGDPFGFGFIMGQQVGFGVRE*






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