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Report for Sequence Feature Glyma.06g247100

Feature Type:gene_model
Chromosome:Gm06
Start:41695801
stop:41699117
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g247100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54190.1AT protochlorophyllide oxidoreductase A JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016630GO-mf protochlorophyllide reductase activity EnsemblGenomesN/AIEA
KOG1208 KOG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) JGI N/AIEA
PTHR24316Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24316:SF100Panther JGI N/AIEA
PF00106PFAM short chain dehydrogenase JGI N/AIEA
GN7V-63065SoyCyc9-rxn protochlorophyllide reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g247100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g247100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g38160 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g247100
>Glyma.06g247100.1 sequence-type=CDS polypeptide=Glyma.06g247100.1.p locus=Glyma.06g247100 ID=Glyma.06g247100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTCAGGCTGCTTCCTTGGTTTCTGCTTCTTTTTCTATTGCTAAAGAGGGAAAGTCTGGTGTATCTCTCAGGGACACCACAATGTTTGGTGTTTCATTGTCGGATACTCTCAAATCTGACTTCAGCTCTCCCTCATCGACTTGCAAAAGGGAATTCCAACAAAAATTTGGCCCTTTGAGGGTTCAGTCAGTGGCAACAACAACTCCAGGAGTCACCAAGGCTTCACCAGAAGGCAAGAAAACTTTGAGGAAAGGCAGTGTTATTATCACTGGGGCTTCCTCTGGATTAGGCCTGGCCACTGCTAAGGCTTTGGCTGAGACAGGAAAGTGGCATGTGATAATGGCCTGCCGGGATTTCCTCAAAGCCGAAAGGGCTGCGAAATCTGCCGGCATTGCTAAGGAAAACTACACTATTATGCATTTGGACCTTGCATCTCTTGATAGTGTGAGGCAATTTGTTGATAACTTTAGGCAATCAGGCCGGCCACTGGATGTGCTTGTTTGCAATGCTGCGGTTTACTTGCCAACTGCCAGGGAACCTACATATACTGCTGATGGCTTTGAACTCAGTGTTGGAACCAACCATCTCGGGCATTTCCTCCTTTCGCGCCTTTTGCTTGACGACTTGAACAAATCTGACTACCCTTCGAAGCGGTTGATCATTGTAGGCTCAATCACAGGAAACACCAACACATTGGCTGGAAATGTGCCACCCAAGGCTAACCTTGGTGACATGAGGGGACTAGCTGGAGGCTTGAATGGGCTAAACACTTCAGCCATGATAGATGGAGGATCCTTTGACGGCGCTAAGGCATACAAGGACAGCAAAGTCTGCAACATGCTTACAATGCAAGAATTCCACAGAAGATACCATGATGAAACTGGGATCACATTTGCTTCCCTTTACCCAGGTTGCATCGCCACAACAGGCTTGTTCAGAGAGCACATTCCCTTGTTCAGACTTCTCTTCCCTCCATTCCAAAAGTACATAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACGCGGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAAGCCAGCGATGCAGATAAGGCTCGCAAGGTTTGGGAGATTAGTGAGAAACTTACTGGTTTGGCTTAA
Predicted protein sequences of Glyma.06g247100
>Glyma.06g247100.1.p sequence-type=predicted peptide transcript=Glyma.06g247100.1 locus=Glyma.06g247100 ID=Glyma.06g247100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALQAASLVSASFSIAKEGKSGVSLRDTTMFGVSLSDTLKSDFSSPSSTCKREFQQKFGPLRVQSVATTTPGVTKASPEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAREPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDMRGLAGGLNGLNTSAMIDGGSFDGAKAYKDSKVCNMLTMQEFHRRYHDETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVSDPSLTKSGVYWSWNAASASFENQLSQEASDADKARKVWEISEKLTGLA*






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