SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48050.1 | AT | Ku80 family protein | JGI | N/A | IEA |
| GO:0000723 | GO-bp | telomere maintenance | EnsemblGenomes | N/A | IEA |
| GO:0006303 | GO-bp | double-strand break repair via nonhomologous end joining | EnsemblGenomes | N/A | IEA |
| GO:0006303 | GO-bp | double-strand break repair via nonhomologous end joining | JGI | N/A | IEA |
| GO:0006310 | GO-bp | DNA recombination | EnsemblGenomes | N/A | IEA |
| GO:0000784 | GO-cc | nuclear chromosome, telomeric region | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0043564 | GO-cc | Ku70:Ku80 complex | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003684 | GO-mf | damaged DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0004003 | GO-mf | ATP-dependent DNA helicase activity | JGI | N/A | IEA |
| GO:0042162 | GO-mf | telomeric DNA binding | EnsemblGenomes | N/A | IEA |
| PTHR12604 | Panther | KU AUTOANTIGEN DNA HELICASE | JGI | N/A | IEA |
| PTHR12604:SF3 | Panther | X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5 | JGI | N/A | IEA |
| PF02735 | PFAM | Ku70/Ku80 beta-barrel domain | JGI | N/A | IEA |
| PF03730 | PFAM | Ku70/Ku80 C-terminal arm | JGI | N/A | IEA |
| PF03731 | PFAM | Ku70/Ku80 N-terminal alpha/beta domain | JGI | N/A | IEA |
|
Glyma.06g244300 not represented in the dataset |
Glyma.06g244300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g37600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g244300.1 sequence-type=CDS polypeptide=Glyma.06g244300.1.p locus=Glyma.06g244300 ID=Glyma.06g244300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGAAACAACAGGAAGCGTTGCTTTTGCTGCTTGATGTGGGCCCGTCAATGCATCCCGCTCTTTCTGAAATTGAGAAAGTCTGCTCCATGCTTGTGCAGAAGAAGCTGATCTATAGCAAATATGATGAAGTGGGAATAGTCTTATTTGGAACTGAAGACACTAATAATGAACTTACTACGGAAGTGGGTGGAAATGCAAAATGTCGAATAAAAGAATTTGATGAAGGAACAAAGGAAGAGCAAGTTACCACCATTGCCAAACAAATGACTGCCCATGGTATAAAAATGGAAAGTATAATTATGAGAGGAAAGCTTAGTCAAGATGCAAACAAGGGAATAATGGATGAGAATGATCGCTTGTTAAATATTTTTTCAAAGGAAACATCAACAAGATTGTTGTATGTGGAGAATCCAATTTCTTTATTTGGTGCTCTTCGAACAAGAAATGGAGCTCCAGTTATAGTTCTCGAAGGGCATCTTGAAATCAATCCAACACTGAGCATTAAGCATGACAAAGAAAGAAATGACGAAGTTTGGTTATGCAAAGAAAACGAACCTGTACTCAGGGTTGGTGGTGACTTCTTTCACCTTCGAAGCACTCCATTCTGTCTTCTTTCTCCTGCAAAGAAAAGGAACCTGTACTCAGGACACCATTACATGAAAGATGTATACGTTTCCCTACCTAAACCTGGAAATACAAGAGCCATGATTGCAGTTTCTGTAGTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCAATAGTACGTTGTGTTTGGAGACAAAGACATGCGAATGTTGTCATCGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATTGTAGCATCGTGGCAACCAAATGGACAACAGCTAGAGGCTACAGCTAACTTAATAAAAAAGCTTGATCTTGCACCACATGGGCAAGAGGAAGTTTTGCTACCTGACTTTACACCAAATCCAGTGTTAGAGCGCTTTTATCATTTTCTTGAGCTGAAATCAAAGGATCCTGATGTGGCAGTACCTCCTCTTGATGACACACTCAAGAAAATTACAGAGCCTGATGCTGACTTGCTTTAG
>Glyma.06g244300.1.p sequence-type=predicted peptide transcript=Glyma.06g244300.1 locus=Glyma.06g244300 ID=Glyma.06g244300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVKQQEALLLLLDVGPSMHPALSEIEKVCSMLVQKKLIYSKYDEVGIVLFGTEDTNNELTTEVGGNAKCRIKEFDEGTKEEQVTTIAKQMTAHGIKMESIIMRGKLSQDANKGIMDENDRLLNIFSKETSTRLLYVENPISLFGALRTRNGAPVIVLEGHLEINPTLSIKHDKERNDEVWLCKENEPVLRVGGDFFHLRSTPFCLLSPAKKRNLYSGHHYMKDVYVSLPKPGNTRAMIAVSVVARAMKEMNKVAIVRCVWRQRHANVVIGVLTPNLSDKENIVASWQPNGQQLEATANLIKKLDLAPHGQEEVLLPDFTPNPVLERFYHFLELKSKDPDVAVPPLDDTLKKITEPDADLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
