SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g242800

Feature Type:gene_model
Chromosome:Gm06
Start:40392405
stop:40396660
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g242800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15352.1AT cytochrome c oxidase 17 JGI N/AIEA
GO:0006825GO-bp copper ion transport EnsemblGenomesN/AIEA
GO:0006825GO-bp copper ion transport JGI N/AIEA
GO:0005758GO-cc mitochondrial intermembrane space EnsemblGenomesN/AIEA
GO:0005758GO-cc mitochondrial intermembrane space JGI N/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding JGI N/AIEA
GO:0016531GO-mf copper chaperone activity EnsemblGenomesN/AIEA
GO:0016531GO-mf copper chaperone activity JGI N/AIEA
KOG3496 KOG Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 JGI N/AIEA
PTHR16719Panther CYTOCHROME C OXIDASE COPPER CHAPERONE JGI N/AIEA
PF05051PFAM Cytochrome C oxidase copper chaperone (COX17) JGI N/AIEA

Expression Patterns of Glyma.06g242800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g242800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g37250 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g242800
>Glyma.06g242800.2 sequence-type=transcript locus=Glyma.06g242800 ID=Glyma.06g242800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTATTTAAATAAGTTGTAGAAGAAAACACCAGAAGAATCGTCTCTCTGTCTGGTCCATTGTACGACTTGCACGCAGAGGCAAGACTCGCAGCCAGGATTATATAAGACAATGAGTGGTGCGCAACTGCAAAGTGCTTCCCCTGCCTTGACCATACAAGGGTCACAGAAAAATGTAGGTTCGGTGGCTGTGGCAACTGCTGCAGAATCAAAGCCAAAGAAGAAAATCTGCTGTGCTTGCCCAGACACTAAAAGGTTGCGAGATGAATGCATAGTAGAGCATGGTGAATCAGCCTGTACAAAATGGATTGAGGCTCATCGACTGTGCCTCCGTGCTGAGGGATTCAATGTTTGAGGTTGATAGTGAGGAAAAGACATTAGTAGATTAACTCAGTTGATTTTATGAAATTGATAGAAGATTTTGGGTTGCAATTTTCAGGTTGACAGTTTAAATTTTGAATAAAAGCTGGGAAATTGATTGCTACGTAATTTGTTACCTTTTAACTTTTTAAACCAGCAGGTTCTACACTGTTAGTTTTGTTGAGACTGAAATATTTAAATGAAATTACAAATTGTCATATTGTC
Coding sequences of Glyma.06g242800
>Glyma.06g242800.1 sequence-type=CDS polypeptide=Glyma.06g242800.1.p locus=Glyma.06g242800 ID=Glyma.06g242800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGGTGCGCAACTGCAAAGTGCTTCCCCTGCCTTGACCATACAAGGGTCACAGAAAAATGTAGGTTCGGTGGCTGTGGCAACTGCTGCAGAATCAAAGCCAAAGAAGAAAATCTGCTGTGCTTGCCCAGACACTAAAAGGTTGCGAGATGAATGCATAGTAGAGCATGGTGAATCAGCCTGTACAAAATGGATTGAGGCTCATCGACTGTGCCTCCGTGCTGAGGGATTCAATGTTTGA

>Glyma.06g242800.2 sequence-type=CDS polypeptide=Glyma.06g242800.2.p locus=Glyma.06g242800 ID=Glyma.06g242800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGGTGCGCAACTGCAAAGTGCTTCCCCTGCCTTGACCATACAAGGGTCACAGAAAAATGTAGGTTCGGTGGCTGTGGCAACTGCTGCAGAATCAAAGCCAAAGAAGAAAATCTGCTGTGCTTGCCCAGACACTAAAAGGTTGCGAGATGAATGCATAGTAGAGCATGGTGAATCAGCCTGTACAAAATGGATTGAGGCTCATCGACTGTGCCTCCGTGCTGAGGGATTCAATGTTTGA
Predicted protein sequences of Glyma.06g242800
>Glyma.06g242800.1.p sequence-type=predicted peptide transcript=Glyma.06g242800.1 locus=Glyma.06g242800 ID=Glyma.06g242800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGAQLQSASPALTIQGSQKNVGSVAVATAAESKPKKKICCACPDTKRLRDECIVEHGESACTKWIEAHRLCLRAEGFNV*

>Glyma.06g242800.2.p sequence-type=predicted peptide transcript=Glyma.06g242800.2 locus=Glyma.06g242800 ID=Glyma.06g242800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGAQLQSASPALTIQGSQKNVGSVAVATAAESKPKKKICCACPDTKRLRDECIVEHGESACTKWIEAHRLCLRAEGFNV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo