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Report for Sequence Feature Glyma.06g240600

Feature Type:gene_model
Chromosome:Gm06
Start:39729921
stop:39736736
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g240600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16710.1AT glycosyltransferase family protein 28 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0006488GO-bp dolichol-linked oligosaccharide biosynthetic process EnsemblGenomesN/AIEA
GO:0030259GO-bp lipid glycosylation JGI N/AIEA
GO:0043541GO-cc UDP-N-acetylglucosamine transferase complex EnsemblGenomesN/AIEA
GO:0004577GO-mf N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups JGI N/AIEA
GO:0030246GO-mf carbohydrate binding JGI N/AIEA
KOG3349 KOG Predicted glycosyltransferase JGI N/AIEA
PTHR12867Panther GLYCOSYL TRANSFERASE-RELATED JGI N/AIEA
PF04101PFAM Glycosyltransferase family 28 C-terminal domain JGI N/AIEA
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESISSoyCyc9 protein N-glycosylation initial phase (eukaryotic) Plant Metabolic Network ISS
GN7V-67844SoyCyc9-rxn N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g240600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g240600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g36690 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g240600
>Glyma.06g240600.2 sequence-type=transcript locus=Glyma.06g240600 ID=Glyma.06g240600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTGGGCTGCACCAGTTAACTGAAACATTGAGCATTTCGAAATCCCCATAGCTTCACCGCCAATTTGGGAGCCGCTATAGATCGGCTTCACACACGGCGGCGCTCCGATTCTCCGACACACTGTCGCTCACCGCTTCACTCTCTCACAAATTGACCGAATCATCGCTAGTTGCTGTCTCTGGTGTCACTACAAGGGAGGGAAGACTATAATTGAATTGAATCGAGTGGGTGTTGCTAAATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGATCTAAAGCCTTTTTCTCCCCTCTATCTCTAGGGTTAAAAGTCTTTGTGAGGGATGATAATCATTTTATGTAATATTTGGATCCCCTAAATATTCAGTCTTAAATGTTGAATTGAATATCATGTCGATGCAAGCAATATATATACAGGATTAAAAAAAAACGTTTTTGAGATT

>Glyma.06g240600.3 sequence-type=transcript locus=Glyma.06g240600 ID=Glyma.06g240600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAAACATTGAGCATTTCGAAATCCCCATAGCTTCACCGCCAATTTGGGAGCCGCTATAGATCGGCTTCACACACGGCGGCGCTCCGATTCTCCGACACACTGTCGCTCACCGCTTCACTCTCTCACAAATTGACCGAATCATCTTGCTGTCTCTGGTGTCACTACAAGGGAGGGAAGACTATAATTGAATTGAATCGAGTGGGTGTTGCTAAATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGATCTAAAGCCTTTTTCTCCCCTCTATCTCTAGGGTTAAAAGTCTTTGTGAGGGATGATAATCATTTTATGTAATATTTGGATCCCCTAAATATTCAGTCTTAAATGTTGAATTGAATATCATGTCGATGCAAGCAATATATATACAGGATTAAAAAAAAACGTTTTTGAGATT
Coding sequences of Glyma.06g240600
>Glyma.06g240600.1 sequence-type=CDS polypeptide=Glyma.06g240600.1.p locus=Glyma.06g240600 ID=Glyma.06g240600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGA

>Glyma.06g240600.2 sequence-type=CDS polypeptide=Glyma.06g240600.2.p locus=Glyma.06g240600 ID=Glyma.06g240600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGA

>Glyma.06g240600.3 sequence-type=CDS polypeptide=Glyma.06g240600.3.p locus=Glyma.06g240600 ID=Glyma.06g240600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAACGATGAAGGCAATGATAAGAAAAAGAGAGTGGTTTTTGTGACTGTAGGGACAACCTGTTTCGATGCTCTTGTGAGAGCTGTGGATTCCAACAATGTTAAACAAGCCTTGTTTGCAAAAGGCTACACCCACCTTCTCATCCAAATGGGTCGTGGATCCTATCTTCCTACTAAGTCTGAAGGAGATGGTTCTTTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCAGATCATCTCAGATCAGCTTCTCTTGTCATTAGCCATGCAGGGTCGGGTAGCATATTTGAGACATTGCAGCTGGGCAAACCTTTAATTGTGGTTGTAAATGAAGATTTGATGGATAATCATCAAAGTGAGTTAGCAGAAGAACTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAAATATGGATTTAAGTTCTCTCTTTCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAATCTCCTTGGTTTTCCTGATGATTGA
Predicted protein sequences of Glyma.06g240600
>Glyma.06g240600.1.p sequence-type=predicted peptide transcript=Glyma.06g240600.1 locus=Glyma.06g240600 ID=Glyma.06g240600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNDEGNDKKKRVVFVTVGTTCFDALVRAVDSNNVKQALFAKGYTHLLIQMGRGSYLPTKSEGDGSLAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLQLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCASPQTLHQTIANMDLSSLFPYSPGDATPVAKHINNLLGFPDD*

>Glyma.06g240600.2.p sequence-type=predicted peptide transcript=Glyma.06g240600.2 locus=Glyma.06g240600 ID=Glyma.06g240600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNDEGNDKKKRVVFVTVGTTCFDALVRAVDSNNVKQALFAKGYTHLLIQMGRGSYLPTKSEGDGSLAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLQLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCASPQTLHQTIANMDLSSLFPYSPGDATPVAKHINNLLGFPDD*

>Glyma.06g240600.3.p sequence-type=predicted peptide transcript=Glyma.06g240600.3 locus=Glyma.06g240600 ID=Glyma.06g240600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNDEGNDKKKRVVFVTVGTTCFDALVRAVDSNNVKQALFAKGYTHLLIQMGRGSYLPTKSEGDGSLAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLQLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCASPQTLHQTIANMDLSSLFPYSPGDATPVAKHINNLLGFPDD*






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