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Report for Sequence Feature Glyma.06g240100

Feature Type:gene_model
Chromosome:Gm06
Start:39596983
stop:39615518
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g240100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53850.2AT haloacid dehalogenase-like hydrolase family protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009086GO-bp methionine biosynthetic process EnsemblGenomesN/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0019284GO-bp L-methionine salvage from S-adenosylmethionine EnsemblGenomesN/AIEA
GO:0019509GO-bp L-methionine salvage from methylthioadenosine EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0043715GO-mf 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity EnsemblGenomesN/AIEA
GO:0043716GO-mf 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity EnsemblGenomesN/AIEA
GO:0043874GO-mf acireductone synthase activity EnsemblGenomesN/AIEA
GO:0046570GO-mf methylthioribulose 1-phosphate dehydratase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2630 KOG Enolase-phosphatase E-1 JGI N/AIEA
KOG2631 KOG Class II aldolase/adducin N-terminal domain protein JGI N/AIEA
PTHR10640Panther APAF1-INTERACTING PROTEIN JGI N/AIEA
PTHR10640:SF2Panther JGI N/AIEA
PF00596PFAM Class II Aldolase and Adducin N-terminal domain JGI N/AIEA
PF00702PFAM haloacid dehalogenase-like hydrolase JGI N/AIEA
PWY-4361SoyCyc9 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Plant Metabolic Network ISS
PWY-7270SoyCyc9 L-methionine salvage cycle II (plants) Plant Metabolic Network ISS
PWY-7528SoyCyc9 L-methionine salvage cycle I (bacteria and plants) Plant Metabolic Network ISS
GN7V-47253SoyCyc9-rxn methylthioribulose 1-phosphate dehydratase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g240100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g240100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g36620 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g240100
>Glyma.06g240100.2 sequence-type=transcript locus=Glyma.06g240100 ID=Glyma.06g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTAAATGGTTCCCTCGCACCTTCTGTTGTGTAAGTATAATAACCATTATACTTGATCATGCAAGTGTTTGGACACATAGCTTTCTTGTGGGTAATAATCGtttcttttttttttttttttCGAAGGCTCTCTACGAAATCTGGCAAAAATAACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGATCCCCATAATAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAGTGGTGAAATTGATCCATTTCCACGTTGCATTGTCCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCACGTCAAAATGTTGGGAGGCATCTATCTGTGACATATGATACTCCTGATACCGAAGCTGATATTAAGTTGCTTTGCTCACAAGTTCAAAGTGACCTTAAACAAGGGATTGCAGGTGCTGTGCCTATTCCCTCTGATGGTGCTTGTAAAAGAGCAGTCATTGATGCATTGGTAACTAATGTCGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAGGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAAAGGTATACATATATTCTAGTGGCAGTAGATTGGCTCAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCTACAGCTGCTAAGGCAGCAGGCTTGGAGGTGATAATTTCTGTTCGACCAGGAAATGCACCTCTCCCTGAAAATCACGGCTTCAAGATGATCAGTTCCTTCTCTGAGATCTGAAAGTAGATGCTCTGAGACCTGAAAGTAGATGCAGTCATCTGAGACTATGTTAAAGGGAACATGGTAGCTACAGATATTGTAACTTCCATTTCAAATGAAATATATTGATGGAGCTAATCCAAGTTGCAGCTTTACTTGCCTTGTTTTTCAGATAATAAGAAAAAGTAAAACCTCCTTAAGTATTAATTTGAAAAAAGTTTGAGATCAGAAAATGAAGAAAAATTGTAAATTTATTTTGGAATATGTTTTGAAAACATATAAATAGAAAACCTGTGTTCTCACTTATTTTAGGCACAAGTCACCTTT
Coding sequences of Glyma.06g240100
>Glyma.06g240100.1 sequence-type=CDS polypeptide=Glyma.06g240100.1.p locus=Glyma.06g240100 ID=Glyma.06g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCTACTGCTACTGCGGACAGCGTGTCCTCGCAGGCATACCTTGAAGGAAACGCAGTGAAGGAAACGAGAATTCTGATATCAGAACTCTGTCGCCACTTCTATTCTCTCGGATGGGTCTCTGGAACTGGTGGCAGCATCACCATCAAAGTCCACGATGACTCTATTTCCAAACCCCACCAACTCATACTCATGTCCCCTTCAGGTGTTCAGAAGGAAAGAATGGAACCAGAGGACATGTATGTGTTATCTCACACTGGATCAGTCTTGTCTGCTCCATCTCCCAAACCTTACCCTCATAAACCTCCCAAGTGTTCTGATTGTGGTCCACTTTTCATGAAGGCATATGAAATGTGTGATGCTGGGGCAGTTATCCACAGTCATGGAATAGAATCTTGTCTTGTAACAATGCTCAATCCTTTAGCAAAGGAATTTAAAATAACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGATCCCCATAATAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAGTGGTGAAATTGATCCATTTCCACGTTGCATTGTCCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCACGTCAAAATGTTGGGAGGCATCTATCTGTGACATATGATACTCCTGATACCGAAGCTGATATTAAGTTGCTTTGCTCACAAGTTCAAAGTGACCTTAAACAAGGGATTGCAGGTGCTGTGCCTATTCCCTCTGATGGTGCTTGTAAAAGAGCAGTCATTGATGCATTGGTAACTAATGTCGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAGGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAAAGGTATACATATATTCTAGTGGCAGTAGATTGGCTCAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCTACAGCTGCTAAGGCAGCAGGCTTGGAGGTGATAATTTCTGTTCGACCAGGAAATGCACCTCTCCCTGAAAATCACGGCTTCAAGATGATCAGTTCCTTCTCTGAGATCTGA

>Glyma.06g240100.2 sequence-type=CDS polypeptide=Glyma.06g240100.2.p locus=Glyma.06g240100 ID=Glyma.06g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGATCCCCATAATAGAGAACACAGCCTACGAATATGAGCTTACAGAATCTCTAGCTAAAGCTATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAGTGGTGAAATTGATCCATTTCCACGTTGCATTGTCCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCACGTCAAAATGTTGGGAGGCATCTATCTGTGACATATGATACTCCTGATACCGAAGCTGATATTAAGTTGCTTTGCTCACAAGTTCAAAGTGACCTTAAACAAGGGATTGCAGGTGCTGTGCCTATTCCCTCTGATGGTGCTTGTAAAAGAGCAGTCATTGATGCATTGGTAACTAATGTCGAAGCTATGATTAAAGCAGATAGAAAGATCACTGCCTTGAAAGAATTGCAGGGTCATATGTGGCGCACTGGTTATGAGAATAATGAATTGAAGGGAATAGTTTTTGATGATGTTCCAGAAGCTCTAGAAAAGTGGCATACCTTGGGCATAAAGGTATACATATATTCTAGTGGCAGTAGATTGGCTCAAAGGCTAATATTTGGACATACAAACCATGGGGACCTAAGAAAATATTTATCTGGCTTTTTTGACACCACAGTAGGGAACAAAAGAGAGACACGCAGTTACGTTGAAATTTCTGAGTCTCTTGGTGTTGATAAGCCATCAGATATTTTATTTGTCACTGATGTTTATCAAGAAGCTACAGCTGCTAAGGCAGCAGGCTTGGAGGTGATAATTTCTGTTCGACCAGGAAATGCACCTCTCCCTGAAAATCACGGCTTCAAGATGATCAGTTCCTTCTCTGAGATCTGA
Predicted protein sequences of Glyma.06g240100
>Glyma.06g240100.1.p sequence-type=predicted peptide transcript=Glyma.06g240100.1 locus=Glyma.06g240100 ID=Glyma.06g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAATATADSVSSQAYLEGNAVKETRILISELCRHFYSLGWVSGTGGSITIKVHDDSISKPHQLILMSPSGVQKERMEPEDMYVLSHTGSVLSAPSPKPYPHKPPKCSDCGPLFMKAYEMCDAGAVIHSHGIESCLVTMLNPLAKEFKITHMEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYIWGDSWISAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPIKSLRSLMIAGESNASDKTRKASGEIDPFPRCIVLDIEGTTTPISFVTEVLFPYARQNVGRHLSVTYDTPDTEADIKLLCSQVQSDLKQGIAGAVPIPSDGACKRAVIDALVTNVEAMIKADRKITALKELQGHMWRTGYENNELKGIVFDDVPEALEKWHTLGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVYQEATAAKAAGLEVIISVRPGNAPLPENHGFKMISSFSEI*

>Glyma.06g240100.2.p sequence-type=predicted peptide transcript=Glyma.06g240100.2 locus=Glyma.06g240100 ID=Glyma.06g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYIWGDSWISAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPIKSLRSLMIAGESNASDKTRKASGEIDPFPRCIVLDIEGTTTPISFVTEVLFPYARQNVGRHLSVTYDTPDTEADIKLLCSQVQSDLKQGIAGAVPIPSDGACKRAVIDALVTNVEAMIKADRKITALKELQGHMWRTGYENNELKGIVFDDVPEALEKWHTLGIKVYIYSSGSRLAQRLIFGHTNHGDLRKYLSGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVYQEATAAKAAGLEVIISVRPGNAPLPENHGFKMISSFSEI*






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