SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g238400

Feature Type:gene_model
Chromosome:Gm06
Start:38959300
stop:38962750
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g238400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53900.2AT Serine/threonine-protein kinase WNK (With No Lysine)-related JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
PTHR13902Panther SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED JGI N/AIEA
PTHR13902:SF32Panther JGI N/AIEA

Expression Patterns of Glyma.06g238400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g238400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g36190 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g238400
>Glyma.06g238400.1 sequence-type=CDS polypeptide=Glyma.06g238400.1.p locus=Glyma.06g238400 ID=Glyma.06g238400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGGCTCAGGAACAACAACAACAAAAACAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCAAGAGTGAGAGGTGGCAATGGGTGCAAGGTTGGGGATGAAAACGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGGGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTTAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGGTTGATGGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTCAAAGAGCCTACGGAATGTGAGCCTAATATCTCCAACTACTGGCAGAGTTCCTTTGATGCTCTTCCTCCTGAATGGATAGATCAGTTTGAGTCAGGCATTCAGACAATCGCTGTGATTCAAGCTGGGCATGGCCTTCTGCAACTTGGTTCTTGCAAGATTATCCCTGAAGACCTCCATTTTGTGCTAAGAATGAGGCACACTTTTGAATCTCTAGGCTATCAATCAGGGTTCTACCTCTCCCAACTCTTCTCTTCAACAAGGAGCACATCCTCTTCCACTTCCATTCCTTCAAAACCATCCACCATTCCAATTAGGCCACCCCCTCCACTCCTCAACTGGGGTCAGAGGCCACTTGAATCTTCCGCTTCTATGCTATCCTCTCCTAGCTTTCAACATGCAGCAGCCAGAATGGGGTTCCCACAGGCCAAAGATGAGACTCATATGTTCCTCATGCCTAATGCATCATCAGAGCAGCTTGCAAGAATGGGAGACATCATGGGGGAGCATGAAAATGACATAAAGTGGCCAAATGGCCTATCCATCTTCAATGCACTCACTGGAAGATCTGATGATGCCAAACTCTTGTTCAATCAAGATAGCTTGGGAGCCAAACCAAGTAGTGATCACAATCACCGCCACACTCTCAACCCTAATCCAAATGCTGGTAGTGTAGCAAACCCAAATGAGTTCTTGAGCTTGGATGGTCACACTGAAGGAAGAGGAGGGGCAAGGAAAGTGGACAAGTTCAAGAGGTGCTTCACTCTACCTGCCAGAATAATGACTTCATCTTCATCTTCTACTTCAATGGATCACCATCAACAACAAGCAGGTGTGGAGTATAGGAATTCAGAAGGTAGTATGTACCAGGATGTCATGGAGACCTTTTTGGAGTGA
Predicted protein sequences of Glyma.06g238400
>Glyma.06g238400.1.p sequence-type=predicted peptide transcript=Glyma.06g238400.1 locus=Glyma.06g238400 ID=Glyma.06g238400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGSGTTTTKTDRSKEAVGMMALHEALRSVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDENGSLMLMWEDGFCRGRVSDCLEEIDGEDPIRKSFSKMSIQLYNYGEGLMGKVTSDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWIDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRSTSSSTSIPSKPSTIPIRPPPPLLNWGQRPLESSASMLSSPSFQHAAARMGFPQAKDETHMFLMPNASSEQLARMGDIMGEHENDIKWPNGLSIFNALTGRSDDAKLLFNQDSLGAKPSSDHNHRHTLNPNPNAGSVANPNEFLSLDGHTEGRGGARKVDKFKRCFTLPARIMTSSSSSTSMDHHQQQAGVEYRNSEGSMYQDVMETFLE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo