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Report for Sequence Feature Glyma.06g233800

Feature Type:gene_model
Chromosome:Gm06
Start:37473862
stop:37475614
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g233800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54080.1AT homogentisate 1,2-dioxygenase JGI N/AIEA
GO:0006559GO-bp L-phenylalanine catabolic process EnsemblGenomesN/AIEA
GO:0006559GO-bp L-phenylalanine catabolic process JGI N/AIEA
GO:0006570GO-bp tyrosine metabolic process EnsemblGenomesN/AIEA
GO:0006570GO-bp tyrosine metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004411GO-mf homogentisate 1,2-dioxygenase activity EnsemblGenomesN/AIEA
GO:0004411GO-mf homogentisate 1,2-dioxygenase activity JGI N/AIEA
PTHR11056Panther HOMOGENTISATE 1,2-DIOXYGENASE JGI N/AIEA
PF04209PFAM homogentisate 1,2-dioxygenase JGI N/AIEA
GN7V-43157SoyCyc9-rxn homogentisate 1,2-dioxygenase Plant Metabolic Network ISS

Proteins Associated with Glyma.06g233800
LocusGene SymbolProtein Name
HGO3 homogentisate 1,2-dioxygenase

Expression Patterns of Glyma.06g233800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g233800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g34890 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g233800
>Glyma.06g233800.1 sequence-type=CDS polypeptide=Glyma.06g233800.1.p locus=Glyma.06g233800 ID=Glyma.06g233800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAAATATTATATCACTTATAGGTACAATGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCCTTATCACTACTGAATGTGGAAGATTGAAAGTTTCTCCGGGTGAAATTGCTATAATACCTCACGGTTTTCGTTTTTCTGTGAATCTGCCTGATGGTCCATCCCGCGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGTCTTGCTTCCCCAAGGGATTTCCTTGTTCCTACTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAGTTTGGTGGTGAACTCTTTGATGCAGTACAAGATTTCTCTCCCTTCAATGTTGTTGCTTGGCATGGTAATTATTATGATTTAAGCAAATTCTGCCCTTATAATACAGTTCTGTTTGATCATAGTGACCCATCTATCAATACTGTGTTGACCGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTCCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCTTCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTTATTCATGGTGGCTATGAGGCCAACGCTGATGGATTTCTTCCCGGTGGTGCAAGTCTCCATAATTGTATGACTCCCCATGGTCCTGATACAAAGTCATATGAG
Predicted protein sequences of Glyma.06g233800
>Glyma.06g233800.1.p sequence-type=predicted peptide transcript=Glyma.06g233800.1 locus=Glyma.06g233800 ID=Glyma.06g233800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKYYITYRYNANKSMDNCAFCNADGDFLIVPQQGRLLITTECGRLKVSPGEIAIIPHGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLASPRDFLVPTAWFEDKSYPGYTIVQKFGGELFDAVQDFSPFNVVAWHGNYYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFLPPYYHRNCMSEFMGLIHGGYEANADGFLPGGASLHNCMTPHGPDTKSYE






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