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Report for Sequence Feature Glyma.06g233500

Feature Type:gene_model
Chromosome:Gm06
Start:37354334
stop:37355342
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g233500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34450.1AT coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative JGI N/AIEA
GO:0006869GO-bp lipid transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0030117GO-cc membrane coat EnsemblGenomesN/AIEA
GO:0030117GO-cc membrane coat JGI N/AIEA
GO:0005319GO-mf lipid transporter activity EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
PTHR10261Panther COATOMER SUBUNIT GAMMA JGI N/AIEA
PF01602PFAM Adaptin N terminal region JGI N/AIEA

Expression Patterns of Glyma.06g233500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g233500 not represented in the dataset
Glyma.06g233500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g233500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g34871 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g233500
>Glyma.06g233500.1 sequence-type=CDS polypeptide=Glyma.06g233500.1.p locus=Glyma.06g233500 ID=Glyma.06g233500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAATTGAAAAGGGGTCTGTTCTTCAGGAGGCAAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAAGTTATTACAAAACTCCTATACCTACTTAATCAGGGAGAGACATTTACAAAGGTTAAAGCCACAAAATTTTTCTTTCCTGTGACTAAGCTTTTTCAGTCTAAAGATATGGGATTAAGGAGAATGGTTATCATCGTCACAAGCTCTATCATGAAGGACATGAACAACAAGATTGATATGTATCGAGCAAATTCCATTCTCGTGTTGTGTCGTATCACTGACGGAACCCTCCTTTCACAAATTGAGCGGTATTTAAAACAAGCCATTGTAGATAAAAATCCAGTTGTTGCAAGTGCTGCTCTAGTTAGTGGCATTCATCTGCTCCAAGTAATAGTCATACTAATTTCCTTTTGTAATTCTTTATATATCCTCATATTCATCTATGCTTTTTGCTTATTACGGATGAATCCTGAAATTGTAAAAAGATGGAGCAATGAGGTACAGGAAGTTGTTCAATCAAGAGCAGCCCTTATACAATTTCATGCACTGGGCTTGCTACATCGGGTATACTTCCAAAATTATTTGGCTCTGTATAAGGTTTTTGGTGTATCAAAGCACCTCAAAAATTGGTCATCATTCTAG
Predicted protein sequences of Glyma.06g233500
>Glyma.06g233500.1.p sequence-type=predicted peptide transcript=Glyma.06g233500.1 locus=Glyma.06g233500 ID=Glyma.06g233500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGIEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVKATKFFFPVTKLFQSKDMGLRRMVIIVTSSIMKDMNNKIDMYRANSILVLCRITDGTLLSQIERYLKQAIVDKNPVVASAALVSGIHLLQVIVILISFCNSLYILIFIYAFCLLRMNPEIVKRWSNEVQEVVQSRAALIQFHALGLLHRVYFQNYLALYKVFGVSKHLKNWSSF*






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